RNA id: TU41211


Basic Information

Item Value
RNA id TU41211
length 2449
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G32892
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12609401 ~ 12612533 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCCGTCTTGCAGCTTGTCTTGCACCACTGGAGGGAGTCCCCTGCTGTGAGGGGAGGCAGCTGGTCTGGAATCCACCGAGAGCACAGAGCCCTGTGATGCAGcctgttttttttaaacttgccACACTAAGTGCTGTGTCTGCGATTTTTCCAGGTGCTGTTTTAGGCTCCTCTTCCATTCCATCAAGTTCAAAGTCATCCGCTGAATATTTAACTCGTGGTTTGTAAATTTTGTACTCCACCAACTTAACGCTGCTGCCCACTCCACCGTTAGACAGTGGCACTGTGACAGCGGGCTGTGGCTTGTTTTCCGTTTGTGCCTCCTTCGGCGTGGTGGCAGtggcaggcagagagagggcGGGCGGAGTGGGCAGCACACTTGCCTTTGGTACAGGCTCACTGCTCAGGACGGTCCTCTGCGCGGCTTGCTCCGTTTTCAGCTGCTTCACTCGAGTCCAGCTCAGATGCTCCCGCTGAATTTCAGTCTGCCGCAGTCTCTGGAACCGGGAAGGCTTCTTTCTCTCGTTGCTTTTCAAAGGCACTGCGAtttggctcaagaagaagcgcCTCTTCGGTTCCTCCTGCGGAGTATTAGCCGGGGGCACAGATGGACAGGCTGCCTCCAAGACCGGACTGTCACCAACAGCCTCGGACTCCTCCTTGGGCTCTACCCCCGCGGTCTCTAGCTTGCTTTGCTCCGACACGGCGCCTTCCTCCTCTTTCTTCACCTCCACTGTGTCCGAGGCAATATCGTCAGCTATCTCCTCACACAAAGCCAGTAAATTCAACTGCCTGGCAGCCCTCTTCGATGCCGCAGCCTTCTCCTCGGCGAGTGCTGCAAGCCGTGCCTTCGTCTTAGCTTGAGGGTTCATTTCCTGCCTTTTTGGAGGAGCTTGTTTggctttggttttctttgagATCTGTTTCCCTATATTAGGCAGCCCAGCTTTACTCAAGGAATCTTCCTGAGACTGTACAGGCAAGGAGCCTTTATCTGCCTGCCCCTCATCATTCAGCTGATCTGAAGAACAAGAGTCTCTCTCAGCTGCTCCTTGcaacacttttgttttaaggCAACTCTTATTTTCGACCACCTGTAACACAGATGAGTCTGTATTCTTTCCAGGAACTGAAATATTCTGTTTCTTATCATCACTGTTCGTGTCTGTAGTATCAGAGCCCACAGCCGCTTCAGTTGCTAGCGTCTTGGAGCTCGTTTTACCTTCATGGCTTGCAGTTTCACTGGATTCATCTGCATCCATTTTAAGCTTCTCTAAAATATTTGGATCAGTGCAACATCTGTTCAGGCCCTGTGCGTCTGCTATACATGCATCACCTTTCGCAGTAGATGAGGTCTTGTATAGATTTGATTCCTTAATAACTTTCAGAAGTGCCACCAACGGAGGGGAGGCCTTTTTCAGACCGGTCCGTTTGGTTTCCCTGCTCATATTCTTTTTCCCTTTCGTGCCAGGTGATGTTTCCTTAGACACATCCACAGTTGCTTTGCAGTTTTGTCTCGGAGCATTCTTCCCATCTTGAGTTTTACTTAGGCTTTGCTTTGTGGAGAGCGCAACCTTCTTGAAGGCCACCTTGCCATCCTCTTCTGAGACTTTAGAGCCCGGGGAATTCTGAAGTCCTTTGcctttgttgtcattttttctaGAAATCCGCCGTTTTGCATTTTCCTTAGGCACAGAAcaatctttcttcttcttcttcagatCAATGGGAGAACCTGTGTCCAATCGGTTTCTTTTCTGTGCTGGTCCCCGGTCAGACGAAGCCGCTTTTCCCTCTCGATTGCGCAGAGTCCTTACAGGCGTATCCTCGACGCTCAGTCTCAAAGATTCCCTTTTATTACCTTCCGGTCTTGGGGGGGCATCTGCTTTTTTTGTCATTCCTTCCGACTTTACTTCCTTTTTGCCAGAGGACTTGCTGGACTTCCTGGAGGCCTTTCTCCCCGACACCTGATTCCGGCCTCTTAATCTAGATGCCGAAGCCTTGCCTTTTGACTTCTTGAGCAGAATGTCTCGTGCTCTTCTTAAAGAGCTGTTTGCACTTTGCACTGGCCGCGACTGGCACGCTCTCTGCAAAGACCTGCTCGATGATGACTTTACACCTGCAGAGTTCTTTTTCTTCTGAGCGTCAGATTTAGGGTTCGTTTTCATCCTAGTCCTCGAACTTTTCCCTTCCTCACCCGTCTCTTCCGTAGGTTTTAGCTCGTTCTCTGCAGCAGATTGCTGGTTAATCTTAACCCTAGAGGACTGTCGTACAGGCTTCCTGCTACTAAGTGCTGTCGCGAGTTTCTTTGTATCTTTCTGCAAAGCGGGTGGCTTTTTCTTGGCACGAGGACAGACAAGAGTTCTTAGCGGATTTCTCTTGGGCTGTGTAGCCACTGCCTTCTGCTCTACTTTTCTCTTCTTGGCCTGAGACTCCAGTGAAGCTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41061 lncRNA upstream 608237 12000963 ~ 12001164 (+) True G32778
TU40936 lncRNA upstream 971521 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA upstream 971521 11632358 ~ 11637880 (+) False G32674
TU40925 lncRNA upstream 1161150 11377956 ~ 11448251 (+) True G32671
TU40745 lncRNA upstream 2101338 10463163 ~ 10508063 (+) True G32549
TU41212 lncRNA downstream 752 12613285 ~ 12613926 (+) True G32893
TU41445 lncRNA downstream 698881 13311414 ~ 13311742 (+) True G33075
TU41465 lncRNA downstream 1021169 13633702 ~ 13638171 (+) True G33093
TU41531 lncRNA downstream 1540269 14152802 ~ 14160703 (+) True G33141
TU41546 lncRNA downstream 1673032 14285565 ~ 14286016 (+) True G33153
AMCG00019290 mRNA upstream 10884 12572727 ~ 12598517 (+) True AMCG00019290
AMCG00019280 mRNA upstream 155029 12446933 ~ 12454372 (+) True AMCG00019280
AMCG00019283 mRNA upstream 168550 12430978 ~ 12440851 (+) True AMCG00019283
AMCG00019282 mRNA upstream 197128 12407378 ~ 12412273 (+) True AMCG00019282
AMCG00019281 mRNA upstream 283563 12324271 ~ 12325838 (+) True AMCG00019281
AMCG00019289 mRNA downstream 29431 12641964 ~ 12671029 (+) True AMCG00019289
AMCG00019293 mRNA downstream 96032 12708565 ~ 12722210 (+) True AMCG00019293
AMCG00019295 mRNA downstream 155421 12767954 ~ 12778615 (+) True AMCG00019295
AMCG00019297 mRNA downstream 246447 12858980 ~ 12873054 (+) True AMCG00019297
AMCG00019300 mRNA downstream 269448 12881981 ~ 12882526 (+) True AMCG00019300
TU40734 other upstream 2199904 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 2980739 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 3070190 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 3260582 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 4224809 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 1826720 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 2551815 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 3431409 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 7994941 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 7994941 20607474 ~ 20610889 (+) True G34170

Expression Profile