RNA id: TU41374


Basic Information

Item Value
RNA id TU41374
length 481
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G33030
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13103953 ~ 13106250 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaatgcattttttattgagTAAATTAAAGGTGTCATACAAAAAGGATAACTCATAGAGGTGTACAGTACAATAAAGTAAACAGTTGTAGgtatttattaatcaattagtTAACTCCGATGATGTTTTTTTCCGTTGTGTTATGGACCATGTAAGATGTACAAAACACAAGATACAACAGAAACAGGTGCTTATCATCTTAAAAGTTTCCACTTTTCCACTGAGATCTGAAATTTCTgttgctaaatatatatatttttgaaatgtgtgtaataaatgGAAAATTGGTTGTAACAGTTTTTAACTGTTCACTTTTGAATGGTTTTGAACATCCATTTCCTTCTCTTCATCTCCTTCTGTAACTACTCCTGTTTCGACCCGCCCTGGCCAGCATTAATTGAGGTGGGCTGTCAACGCTGCAGGAACCCACTGACACATCTCCTGTTGAACTGTAGCTACTTAGGTCCTCAGGCTGGTACATG

Function

GO:

id name namespace
GO:0005911 cell-cell junction cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41149 lncRNA downstream 650326 12452597 ~ 12453627 (-) True G32844
TU41125 lncRNA downstream 686134 12414106 ~ 12417819 (-) False AMCG00019284
TU41123 lncRNA downstream 736727 12366786 ~ 12367226 (-) True G32825
TU41072 lncRNA downstream 1036901 12062278 ~ 12067052 (-) True G32786
TU41067 lncRNA downstream 1043702 12059624 ~ 12060251 (-) True G32784
TU41434 lncRNA upstream 62186 13168436 ~ 13171846 (-) False AMCG00019312
TU41440 lncRNA upstream 149113 13255363 ~ 13257313 (-) True G33070
TU41446 lncRNA upstream 205253 13311503 ~ 13311800 (-) True G33076
TU41464 lncRNA upstream 527036 13633286 ~ 13633502 (-) True G33092
TU41521 lncRNA upstream 975465 14081715 ~ 14081918 (-) True G33132
AMCG00019301 mRNA downstream 85929 13008762 ~ 13018024 (-) True AMCG00019301
AMCG00019302 mRNA downstream 97625 12985747 ~ 13006328 (-) True AMCG00019302
AMCG00019303 mRNA downstream 138043 12939007 ~ 12965910 (-) True AMCG00019303
AMCG00019292 mRNA downstream 468694 12616147 ~ 12635259 (-) True AMCG00019292
AMCG00019291 mRNA downstream 490106 12600533 ~ 12613847 (-) True AMCG00019291
AMCG00019312 mRNA upstream 63622 13169872 ~ 13188292 (-) True AMCG00019312
AMCG00019311 mRNA upstream 98174 13204424 ~ 13208267 (-) True AMCG00019311
AMCG00019310 mRNA upstream 350789 13457039 ~ 13471322 (-) True AMCG00019310
AMCG00019313 mRNA upstream 375942 13482192 ~ 13537109 (-) True AMCG00019313
AMCG00019315 mRNA upstream 523755 13630005 ~ 13661038 (-) True AMCG00019315
TU39603 other downstream 8167957 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 10925303 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 11020682 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 11020682 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 11393410 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 555866 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 1385641 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 1385641 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 1845592 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 2586232 15692482 ~ 15721452 (-) True G33381

Expression Profile