RNA id: TU41440


Basic Information

Item Value
RNA id TU41440
length 1903
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G33070
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13255363 ~ 13257313 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCATAGGTATAATCATGATGTAGTTGTGCCCTGATATCAGTCTTGGGTCCTTGAGGCCAGTCCTCGTCCTCGAGGACAGTTTTCCAGGTCTCGTACTTGGCCTTGGCCTCAGGGGTTTGGCCCCAGGTGGCCTCGCTCCAAGGACTTTAAggacactttttaaaattaatcagttttctaaaaatgttatcGTGTGGAGTTAAATTAGATCACGGACACAAATTATCTTACTTCTttgtaatttcttattttttgtataatggcAAACACAAATGTCTGAAAACGTGTTTTCACACTGCTGCATTGAAGCAAGCAAATGGAGTGCCAAATGTCTTAAATGCATCGAGATTGTGGAGACAAAATGGACAATGGATTTACTAAGCAAGTAACTGATCATACCCCtctttatgaaatatatattaatgacttaaattaatacaaatccagATGTTCCTTACATTCACACTTTGGAATAGTGCACTTTGCTAAACGATTCCGACGTGTGGTAATCTTAATATAACGGggatgttttacagtttatagATGATTTAAAGATTTGTATGTCCACTAAAACCTAAGCatatcatttaaatatctgatatttctgaaaatatgtttagctttttttaacactagaactgcCACTTTTTGTGCAGCTctttgcaattcaaaatatgtctTCTCATATCCGTTCTTACATGTTAACCCAGAtatctggatcaatgccttgatcagtcaacTGTTAGATCTtgaatactatttatttttgtattagtgtaggtcactgtagtgttgaaaagcacggCTTGGCCTTATGGCTCCTGGCTACGACCTTGACCTTGGCCTTTTGAGTCCTGGCCTTGAATCCAAGACTGCCTGATATAACAGTCAAGGATTGTACAATGATAACGCAGCACTGGCAGCATTTGACTTTATTGTACTTCTGAAATTGGCCAAGCCGAAGCAAAACATCActtgaaaacaacaaagacaaaaagatCACGGTCCTGCTGTTctttaataaaatggaaatgtagcTGCCCTTTCAAGACTGAAGAGGCAGAAGAGCTCCAATTTAACCCTTCACTTCTGCACGCTAACATAGGAGTACATACCTTACTGCTAACCCCGTCACACAATCATTACTTTTCCTTCTATGTTCCAGATCTCTTCTGGCTCTCTTTTAACAGAGACCCCAGTATCAAATGAGTTAAAttgatcattattatattaatacttataaaatgaaaaagcagtaCATTTTTGAGTATTGAAATGATTGACTTAATTCAAAGTACCAGAAACCAGCAGGAGAATTGTTCTctcatctttatttaaattgctaCATTTTCTTGTAGGGTGTAATATTGCTTCTTTTTCAATATAACTTTTGTTTGGCTATGCTTATGTTCCCAAAGCCTTCACTCTTATTGGTCCAAAGTTAattttttgattttaaaattgtttatttatctagAGAGTACCAAATGactaaaattttatttttttaatatgaaatctttaatttacatgtaattaataattgtgtAGGGATCTGAGAagtatacacattttttgtgttgcctaatgtattttttagtaTAATGTGTTTAGAAAAAGATAATCAGATGTATTATATTAGTCTGTTCTATTCTTACTCCAAGGATGCTTTGCAAGTCCAGAATGACCTACACCAAAGAAAGgctgtaattgtattaaatgtttccaaatctGTGTGTCTATCAAATGGAAATCAGGACAGAATCTCAATTTCCTCAAATACTGATAAAAACTGAGTTATCCATTTACATTTCTCCAATAGGTGGGAGAGAAAACCGAAAAtgattcattttgcttttttgtgcctgtgctttttgtttttccctccaGCGTTGGCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41434 lncRNA downstream 83517 13168436 ~ 13171846 (-) False AMCG00019312
TU41374 lncRNA downstream 149113 13103953 ~ 13106250 (-) True G33030
TU41149 lncRNA downstream 801736 12452597 ~ 12453627 (-) True G32844
TU41125 lncRNA downstream 837544 12414106 ~ 12417819 (-) False AMCG00019284
TU41123 lncRNA downstream 888137 12366786 ~ 12367226 (-) True G32825
TU41446 lncRNA upstream 54190 13311503 ~ 13311800 (-) True G33076
TU41464 lncRNA upstream 375973 13633286 ~ 13633502 (-) True G33092
TU41521 lncRNA upstream 824402 14081715 ~ 14081918 (-) True G33132
TU41616 lncRNA upstream 1435392 14692705 ~ 14698412 (-) True G33204
TU41618 lncRNA upstream 1457478 14714791 ~ 14718233 (-) True G33206
AMCG00019311 mRNA downstream 47096 13204424 ~ 13208267 (-) True AMCG00019311
AMCG00019312 mRNA downstream 67071 13169872 ~ 13188292 (-) True AMCG00019312
AMCG00019301 mRNA downstream 237339 13008762 ~ 13018024 (-) True AMCG00019301
AMCG00019302 mRNA downstream 249035 12985747 ~ 13006328 (-) True AMCG00019302
AMCG00019303 mRNA downstream 289453 12939007 ~ 12965910 (-) True AMCG00019303
AMCG00019310 mRNA upstream 199726 13457039 ~ 13471322 (-) True AMCG00019310
AMCG00019313 mRNA upstream 224879 13482192 ~ 13537109 (-) True AMCG00019313
AMCG00019315 mRNA upstream 372692 13630005 ~ 13661038 (-) True AMCG00019315
AMCG00019318 mRNA upstream 476652 13733965 ~ 13739371 (-) True AMCG00019318
AMCG00019317 mRNA upstream 492541 13749854 ~ 13758818 (-) True AMCG00019317
TU39603 other downstream 8319367 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 11076713 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 11172092 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 11172092 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 11544820 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 404803 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 1234578 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 1234578 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 1694529 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 2435169 15692482 ~ 15721452 (-) True G33381

Expression Profile