RNA id: TU41531


Basic Information

Item Value
RNA id TU41531
length 1689
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G33141
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 14152802 ~ 14160703 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAATTTAATTAGACTATCAAACAATGTCATTCTATCAAACCAAATGAGTTAAGAACATTGGACTTTCTTTTTACAGAGATCCAGACACAGTGAAGTGGAAAAAACAATTCAGAAACAGTCACTAGCTCCAAAATTAGCATTTTATTCGGATTGTTGGGGTCAGAgatgtataatttgtattctgGTACATATTATCCGCAAAGCCGCCGTCAAAAACCTTTCCAGTCTTAAAGCTGTTTCAGTTATTAGTGCCACTGGTGTCATAACACCCCCTTTTTTGGTACGAATTCAAACAGTTGTGCTGATTAGATTCCTATTTTTACAAAAGGCTATTTCTTACTTTCCATTATGTCACCCATTTGTGtaaatgtcattttgttttgtaaataaatttTGGAAATAcctttttataatgaaaagataaaaacatgcaaaaaactTGAATCTGTAGTccaaattatacatatacaagtTCTGAACTTTTTGCACTTCTTCATAGACTACGCCAAAAAACATTATGTACACGCATTTTCTTTACAGTGAAGTAAAAATCAAAGTACCAGAGGTTGACTAAGGCAAATAAAGTGTACATGgattagaacaaaataaacattttcgaAAAATACTATACcacttcagaaaaacaaaaactgattcCGCTACAAAATGATGATTTATGACTCCCTTTATTTGCAACCAGCTGCATAAGTTTAAAATTTTTAGTGAAAAAATCTATCTAAAAGTCTAGCGCACTGTACATTGCTGTTTTCAGGTGTTTCTCCCCCTCCAAGCTAACAAAGATCCTTCCAtgactttttcatatttttttccccattcgcttaaatatttgtattaaacaaacaGCAGTATGGTGTAACCAAAAAGCATGTACAAGCATACCATTTTAACATACTTCCTTAGTTTTGAAATCACTCCAAAAGTCAGTACCATTAAAGCCTTGAACATAAAACTAAGTATTCAGAtccaaaaatgtacaaaaaggcACATAAAATCCCAGTGCTTCTGTACTGTGAAATTCAAGTGTAACTGAGCGCTCTTTTAATATCAACGATCCAAACAGTGTCAGTTTACCAATGTTCCCTCTGAGCTCGAATTTGATTGCAGCCTATGCCAAAGCCTTCAACAAGCATATGTGCTAGTAGACTACAAAGTTAAAGCCtagctttttttgtgtttttttgtgtttttttgtttgttttgtttgatctcTCTTCGGGAATATCGGTTTTAGAAGCTGTCCTTGTCCCATAAAAAAGGTGCCACTCAATTTTTAATTAGTCGTCGTTTCCACCATACATGTCTGCAAGTTTCTTAAACCTTGGTCCCCAGTCGTTGAGGTAATCATAGTCCTGGTCGCCTCCACTACTGGAAGAGTTGAGGGAGCTCAAAGAGCCTGCTGTGGATCCACTGCCTTCATAGTCAAACACCAACAGGGAGTCATAGGGTGGAGCTGTTGGGTCGTTGTCTGCAGCCTTAAGTCCcTCATTAATGAAGTCACCAATATCCCCTGGGTGAGGAGCAGCTGATCTTACTGGATACTGGGGCTCGGGATGAATTGGTCTCTCATCAAGACGTCTAATACCAACAGGCTTGATGGCATCCGGCTCTACTGTATCAGGCTGCTGAAGCTGGCTCAGATCATAATCCTGATCCTCCTCTCCGCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41465 lncRNA upstream 514631 13633702 ~ 13638171 (+) True G33093
TU41445 lncRNA upstream 841060 13311414 ~ 13311742 (+) True G33075
TU41212 lncRNA upstream 1538876 12613285 ~ 12613926 (+) True G32893
TU41211 lncRNA upstream 1540269 12609401 ~ 12612533 (+) True G32892
TU41061 lncRNA upstream 2151638 12000963 ~ 12001164 (+) True G32778
TU41546 lncRNA downstream 124862 14285565 ~ 14286016 (+) True G33153
TU41557 lncRNA downstream 331189 14491892 ~ 14492206 (+) True G33161
TU41737 lncRNA downstream 1323375 15484078 ~ 15533196 (+) True G33307
TU41764 lncRNA downstream 1394116 15554819 ~ 15626955 (+) True AMCG00019345
TU41845 lncRNA downstream 1767866 15928569 ~ 15931201 (+) True G33392
AMCG00019316 mRNA upstream 478050 13670253 ~ 13674752 (+) True AMCG00019316
AMCG00019314 mRNA upstream 486225 13662222 ~ 13666577 (+) True AMCG00019314
AMCG00019306 mRNA upstream 841980 13292718 ~ 13310822 (+) True AMCG00019306
AMCG00019309 mRNA upstream 915976 13214956 ~ 13236826 (+) True AMCG00019309
AMCG00019308 mRNA upstream 990740 13153820 ~ 13162062 (+) True AMCG00019308
AMCG00019322 mRNA downstream 512270 14672973 ~ 14698199 (+) True AMCG00019322
AMCG00019321 mRNA downstream 554102 14714805 ~ 14720892 (+) True AMCG00019321
AMCG00019325 mRNA downstream 736122 14896825 ~ 14901846 (+) True AMCG00019325
AMCG00019331 mRNA downstream 742639 14903342 ~ 14907478 (+) True AMCG00019331
AMCG00019324 mRNA downstream 753322 14914025 ~ 14927971 (+) True AMCG00019324
TU40734 other upstream 3743305 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 4524140 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 4613591 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 4803983 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 5768210 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 278550 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 1003645 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 1883239 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 6446771 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 6446771 20607474 ~ 20610889 (+) True G34170

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034310 False 4853 mRNA 0.48 16 NC_007131.7 17739923 ~ 17819238 (+)
grasscarp (Ctenopharyngodon idella) TU246532 True 2109 lncRNA 0.42 2 CI01000051 1014815 ~ 1017172 (+)