RNA id: TU41616


Basic Information

Item Value
RNA id TU41616
length 1114
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G33204
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 14692705 ~ 14698412 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGTagcaagaaaacatttattttttgcggAAAGTTATATTACTACTCAAATGAAAACTGTAGTGTTATATAAACTCACTACGACATATTACAGTAGGCATTactgcatacatacattcacacacacatatgctttATCTTgcagttaaaagtaaaaatctgcttgaataataaaatggaagaaagtaaaaaaacatacatatatgaatGTAATGCGTTTTATTGAGATGTTTGGgggaaaatacatgtaatttgttTGCTGAATTGTTTCCAGACATGGTACTTCTATAATGAGAGATCTGATGAGCACAGTGGtcttaagcaaaacaaaaaattacaatGGCACACATACTGCTTCTAGTAGGCCCCTTGCTatgaaaactaattaaaaatgttttactgaccattacagaaaataaacacatcttgACTTGGtagcatgcatacatacatggatacatacacacatacttgtGTTACATGAAATAAGTGCTTACTGCTAAAGATGGCAATGCTCCTTTTGGGAAGGTTGCAAAGTAAATATACAGGTTAAATTGCAGTTCAAGGTCTGATCAAACAgttcaaaatcaaaattgtgTATAATAACACTCAGTCCAAATATTGCTGTATGGAAGGTGTGCTGAATTAAGTTTACTTACGTAATAACATTAGACACCCAAGGATAAGGAGCCCAATGCCTGCAGGTCCAAATACAGCACCAGATGTTTTTCTTGACTCTCCACAGGATTTATCTTTATTGCAGGTACAAACATCAACTTGTAAAACCTGTTTGTCAGGACAGGACAACCCTTGTTGGTCTTTAACTTCAAGACCGATTGTATATAAACCAGGCCACATCTTCTCCGCATTCCTTAGGATTACAGATGTATCttcaGAGGTTCAACTGTCCATTTTCCCTTTGTATCTTCAGGTATAATTGTGAATGAAAACGGGGCTCCATTGGGATCAATGTCTCCATCCTCAGCAGTGACATACACAACGTGGTCATCTGTACATAAAATCTGTGAAGTACTTGTAAGATGAGGACAGTGATCATTGAAGTCTTCAACCTGAATGGCAATGGTACCAGTGGCTGTTTTTGAAGGTAAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41521 lncRNA downstream 610787 14081715 ~ 14081918 (-) True G33132
TU41464 lncRNA downstream 1059203 13633286 ~ 13633502 (-) True G33092
TU41446 lncRNA downstream 1380905 13311503 ~ 13311800 (-) True G33076
TU41440 lncRNA downstream 1435392 13255363 ~ 13257313 (-) True G33070
TU41434 lncRNA downstream 1520859 13168436 ~ 13171846 (-) False AMCG00019312
TU41618 lncRNA upstream 16379 14714791 ~ 14718233 (-) True G33206
TU41689 lncRNA upstream 363362 15061774 ~ 15062351 (-) True G33268
TU41706 lncRNA upstream 463300 15161712 ~ 15161967 (-) True G33282
TU41710 lncRNA upstream 484368 15182780 ~ 15184537 (-) True G33285
TU41716 lncRNA upstream 555620 15254032 ~ 15256023 (-) True G33291
AMCG00019327 mRNA downstream 54473 14616919 ~ 14638232 (-) True AMCG00019327
AMCG00019320 mRNA downstream 512991 14152717 ~ 14179714 (-) True AMCG00019320
AMCG00019319 mRNA downstream 868077 13817357 ~ 13824628 (-) True AMCG00019319
AMCG00019317 mRNA downstream 933887 13749854 ~ 13758818 (-) True AMCG00019317
AMCG00019318 mRNA downstream 953334 13733965 ~ 13739371 (-) True AMCG00019318
AMCG00019326 mRNA upstream 22447 14720859 ~ 14731647 (-) True AMCG00019326
AMCG00019330 mRNA upstream 78396 14776808 ~ 14782550 (-) True AMCG00019330
AMCG00019328 mRNA upstream 138818 14837230 ~ 14895216 (-) True AMCG00019328
AMCG00019329 mRNA upstream 228289 14926701 ~ 14937229 (-) True AMCG00019329
AMCG00019332 mRNA upstream 295396 14993808 ~ 15000069 (-) True AMCG00019332
TU41560 other downstream 134415 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 200487 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 1027475 13662116 ~ 13665230 (-) True G33106
TU39603 other downstream 9756709 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 12514055 2177980 ~ 2178650 (-) True G31130
TU41680 other upstream 253430 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 994070 15692482 ~ 15721452 (-) True G33381
TU42573 other upstream 4743983 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 6045118 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 8449449 23147861 ~ 23199608 (-) True G34470

Expression Profile