RNA id: TU41680


Basic Information

Item Value
RNA id TU41680
length 618
RNA type TUCP
GC content 0.49
exon number 3
gene id G33259
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 14951842 ~ 14991996 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGTTTCCTGTCAACAGGCACGGCAAGGGCAGGAGCACAACTCCCGAAAGTCCTGGAAACCAGAAAgaaggagagcaagagagacgGGTCTCTGCCAGGACCATGGCTGACTCTCGCTGAGCGGTTGCAAGGGGTTTAATGCCAGCGAGCAAACATGGACGTGGGATTAATGCTCTATAACAACCTGAAAGATGTGACATGGAGCACGACGTCTCTGCCCTTAGACCGACTGGTCAGCGCATACCGTCTGCCGCAGATCGTCAAGCTGGACAGTGGTGAATCCGTCGAATGTCTGCGAGAGAATGACTACCTTTTGATTCACTCTTGTCGACAATGGACTACCATCACTGCCCACAGTCTGGAAGAAGGCCATTATGTAATTGGGCCCAAAATAGAGATCCCAGTCCATTATGGAGGTCAGTTCAAACTGCTGGAACAGGACCGAGACATAAAAGAACCCGTGCAATACTTCAACAGTGTGGAGGAGGTGGCCAAGGCATTTCCTGAACGGGTTTATGTCATGGAGGAAATAACATTCAATGTTAAGGTCAGCATGAAGAGCAAATATTTATCAGCACCTATGAGATTAATCACTGGAAAGAAATTTAACATGAAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41618 lncRNA downstream 233609 14714791 ~ 14718233 (-) True G33206
TU41616 lncRNA downstream 253430 14692705 ~ 14698412 (-) True G33204
TU41521 lncRNA downstream 869924 14081715 ~ 14081918 (-) True G33132
TU41464 lncRNA downstream 1318340 13633286 ~ 13633502 (-) True G33092
TU41446 lncRNA downstream 1640042 13311503 ~ 13311800 (-) True G33076
TU41689 lncRNA upstream 69778 15061774 ~ 15062351 (-) True G33268
TU41706 lncRNA upstream 169716 15161712 ~ 15161967 (-) True G33282
TU41710 lncRNA upstream 190784 15182780 ~ 15184537 (-) True G33285
TU41716 lncRNA upstream 262036 15254032 ~ 15256023 (-) True G33291
TU41846 lncRNA upstream 866181 15858177 ~ 15931208 (-) False G33393
AMCG00019329 mRNA downstream 14613 14926701 ~ 14937229 (-) True AMCG00019329
AMCG00019328 mRNA downstream 56626 14837230 ~ 14895216 (-) True AMCG00019328
AMCG00019330 mRNA downstream 169292 14776808 ~ 14782550 (-) True AMCG00019330
AMCG00019326 mRNA downstream 220195 14720859 ~ 14731647 (-) True AMCG00019326
AMCG00019327 mRNA downstream 313610 14616919 ~ 14638232 (-) True AMCG00019327
AMCG00019332 mRNA upstream 1812 14993808 ~ 15000069 (-) True AMCG00019332
AMCG00019333 mRNA upstream 11456 15003452 ~ 15018066 (-) True AMCG00019333
AMCG00019334 mRNA upstream 38357 15030353 ~ 15031231 (-) True AMCG00019334
AMCG00019335 mRNA upstream 146306 15138302 ~ 15153516 (-) True AMCG00019335
AMCG00019339 mRNA upstream 313927 15305923 ~ 15314117 (-) True AMCG00019339
TU41560 other downstream 393552 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 459624 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 1286612 13662116 ~ 13665230 (-) True G33106
TU39603 other downstream 10015846 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 12773192 2177980 ~ 2178650 (-) True G31130
TU41832 other upstream 700486 15692482 ~ 15721452 (-) True G33381
TU42573 other upstream 4450399 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 5751534 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 8155865 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 14526000 29517996 ~ 29521984 (-) True G35067

Expression Profile