RNA id: TU41707



Basic Information


Item Value
RNA id TU41707
length 596
RNA type TUCP
GC content 0.46
exon number 5
gene id G33283
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15164348 ~ 15169841 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGGTGACAACATATCAAAGGCACTGGTACCCACATTTCCAAATATCTTGGTCGTGTCTGAGAATACTCTCAATTCACAACAGAACTCCGGTAATGGTGGAGAGAATGCATTACAATTGGACTATCCCTCTAGGCGTCGTCATAGCTGTGCCTTGGTAAACACTCCATCACCCTGTGTTAACAAAGCTATTCAACACATTCAAGAGCTTGAGAAAAAAATTGAGGACTGGTTTCAACAGcTGGAAAATGCCCCCTTTCGAACTCCTACAGAGAAGAATCACACTGACAAAGTTGTAAGGTTTCCGTCCATGAGCTCCAATATTGCTAAACCTCCTGTCACCTCTTTAATGTCAAATTGCCTGTGCATTGAAGGGATGGGTCTTTACACAACAGAGAAAGGCACATCGACCCCTCTCAGAGAGGAGACTGGAGCCGTGCTATCAGAGGTTATTGACCTGATCGGCCGTCTTGAAGCTGACCGCCAAGAGGCAGAAGAAGCTTTGAAGTTGGAGAAGAAGCGTAGAAAAACATTAGGGGAGAAAATCGACCGCCTGTCACTATGGAGGCTTCAGCAGTTCCCAGTTGCTGTGCAGAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU41557 lncRNA upstream 672142 14491892 ~ 14492206 (+) True G33161
TU41546 lncRNA upstream 878332 14285565 ~ 14286016 (+) True G33153
TU41531 lncRNA upstream 1003645 14152802 ~ 14160703 (+) True G33141
TU41465 lncRNA upstream 1526177 13633702 ~ 13638171 (+) True G33093
TU41445 lncRNA upstream 1852606 13311414 ~ 13311742 (+) True G33075
TU41737 lncRNA downstream 314237 15484078 ~ 15533196 (+) True G33307
TU41764 lncRNA downstream 384978 15554819 ~ 15626955 (+) True AMCG00019345
TU41845 lncRNA downstream 758728 15928569 ~ 15931201 (+) True G33392
TU41859 lncRNA downstream 832955 16002796 ~ 16003201 (+) True G33404
TU41864 lncRNA downstream 931117 16100958 ~ 16101159 (+) True G33408
AMCG00019323 mRNA upstream 219121 14938940 ~ 14945227 (+) True AMCG00019323
AMCG00019324 mRNA upstream 236377 14914025 ~ 14927971 (+) True AMCG00019324
AMCG00019331 mRNA upstream 256870 14903342 ~ 14907478 (+) True AMCG00019331
AMCG00019325 mRNA upstream 262502 14896825 ~ 14901846 (+) True AMCG00019325
AMCG00019321 mRNA upstream 443456 14714805 ~ 14720892 (+) True AMCG00019321
AMCG00019337 mRNA downstream 49380 15219221 ~ 15228776 (+) True AMCG00019337
AMCG00019336 mRNA downstream 70681 15240522 ~ 15255397 (+) True AMCG00019336
AMCG00019342 mRNA downstream 266474 15436315 ~ 15479736 (+) True AMCG00019342
AMCG00019347 mRNA downstream 350585 15520426 ~ 15529911 (+) True AMCG00019347
AMCG00019344 mRNA downstream 396814 15566655 ~ 15581014 (+) True AMCG00019344
TU41554 other upstream 677642 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 4754851 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 5535686 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 5625137 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 5815529 9329479 ~ 9348819 (+) True AMCG00019215
TU41862 other downstream 874101 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 5437633 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 5437633 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 5437633 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 7445782 22615623 ~ 22625205 (+) False AMCG00019475

Expression Profile