RNA id: TU41832


Basic Information

Item Value
RNA id TU41832
length 1293
RNA type TUCP
GC content 0.42
exon number 5
gene id G33381
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15692482 ~ 15721452 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTATTCTCCTTAAATGTCCCAATCCTGCACCTGCAGATGTAATTCTTTATGTGTGGGTGGTAAGCATCGTGAAAATTTACAAGACATTTTAGGAGAATAAGGTTTAAGACAGAGGGTCATAAGAATCTATTAGAATTAATTGCTGTAGGTCTGTCCTTCTGGCGGCTGCGCAAGCTTCAAATTCTCTTTGGCCATCATTAGGCGCCGTAGCTCTTGAAGTACAACCTTAATGCTATAGGAATTTTGCCATTTAGCTAGAATTGGTATGCTACGAGAATCCACCGTCCCATTGGAATTATTTATTCCATTCATACTAATTTTTGTTACAAATCTAACAGTTGGTGGTAATTCTGGATATTGAGGTCCACACTCTACTTTGAGGCTGTATATTCTGTTTTCATAGTTAGTTCGTGCTGGTCCAATGATCATGCCTGTCCATCTTGTAAGCGTCATGTCTTCATCATCTTCAAGGCCCCAGCTGACAGTACCATCACCCACTCCTTTCTGTCCTTCTTCAAGCTCTTCCAACAAGCGGAAGTTACGAGGAACTTTAACTCCTTCAGAGCGAGCACGGATTTCCTGTGCGGGGCTGCGTTCCCATCCCTTCGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGCGGTTCATCTCGGCCATCCTTAGGTCGCTGGTTCGAATCCGGCTCGAAGGACATTTTGTTTCTGAGGTCGTTCGTTTCCCAGAACGTTTTGCTGTTCGATcgagagaaaaggaaacaacaacattcgaaatgtaaaatgtaatcattcGAGAAGAATATAGGAAACGAAGAAcaagtaaatgaataaacactGGAGAATGCGGGCATCGATCCCGCTACCTCTCGCATGCTAAGCGAGCGCTCTACCATCTGAGCTAATTCCCCGTTTCTTGCTGTTGCCGAGGTTCTCATTATATTATTCAATAGTAGTCATCTGACAGCGTCACAATTAAGCAGCTGGGAATCGAACGCGGGTCCACCAAATTCTCCGGTTTAACGGATTGTTATTTGTTACTggcaacagaaatgtaaaactattttaattgaaatacttaacgtatataaatattgttagTGCATACGCTATATGCCGTCTtactaattaaaatcaaaattacGACATTGAATTTACGATGAGCTtcattttaagtaaattaatcaACAACAATGACAGCTACAACAAAATGTCCTTCGAGCCGGATTCGAACCAGCGACCTAAGGATGGCCGAGATGAACCGCTACAGTCCTCCGCTCTACCAACTGAGCTATCGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41716 lncRNA downstream 436459 15254032 ~ 15256023 (-) True G33291
TU41710 lncRNA downstream 507945 15182780 ~ 15184537 (-) True G33285
TU41706 lncRNA downstream 530515 15161712 ~ 15161967 (-) True G33282
TU41689 lncRNA downstream 630131 15061774 ~ 15062351 (-) True G33268
TU41618 lncRNA downstream 974249 14714791 ~ 14718233 (-) True G33206
TU41846 lncRNA upstream 136725 15858177 ~ 15931208 (-) False G33393
TU41848 lncRNA upstream 206993 15928445 ~ 15931208 (-) True G33393
TU41877 lncRNA upstream 550615 16272067 ~ 16311866 (-) True G33419
TU41928 lncRNA upstream 896850 16618302 ~ 16618691 (-) True G33461
TU42002 lncRNA upstream 1322566 17044018 ~ 17044239 (-) True G33531
AMCG00019348 mRNA downstream 11152 15632482 ~ 15681330 (-) True AMCG00019348
AMCG00019349 mRNA downstream 62481 15628489 ~ 15630001 (-) True AMCG00019349
AMCG00019343 mRNA downstream 141454 15533235 ~ 15551028 (-) True AMCG00019343
AMCG00019340 mRNA downstream 332414 15359700 ~ 15360068 (-) True AMCG00019340
AMCG00019341 mRNA downstream 333819 15358008 ~ 15358663 (-) True AMCG00019341
AMCG00019351 mRNA upstream 142335 15863787 ~ 15864856 (-) True AMCG00019351
AMCG00019352 mRNA upstream 266711 15988163 ~ 15988928 (-) True AMCG00019352
AMCG00019356 mRNA upstream 668925 16390377 ~ 16421282 (-) True AMCG00019356
AMCG00019355 mRNA upstream 733288 16454740 ~ 16474345 (-) True AMCG00019355
AMCG00019357 mRNA upstream 786186 16507638 ~ 16552225 (-) True AMCG00019357
TU41680 other downstream 700486 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 1134192 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 1200264 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 2027252 13662116 ~ 13665230 (-) True G33106
TU39603 other downstream 10756486 4932838 ~ 4935996 (-) False AMCG00019129
TU42573 other upstream 3720943 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 5022078 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 7426409 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 13796544 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 13823779 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile