RNA id: TU41848


Basic Information

Item Value
RNA id TU41848
length 2535
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G33393
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15858177 ~ 15931208 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTGcatcaatacatgtttatttatttaattagtataaaAATGGAATACAAGTCTTAGAAAAAATACAgatgaacatttaaatacacattttgtttaattaatgataCATATGTTATACTTCTGCCTATGTCAATTACAACTgcaattgtttgtgtgtgcatttgtgccACTAGCTCATGGTTAGACTTTGCATTTTATCTTAAATCATGGATGATATGATTGTGTAGCAAATACAATAGCCCCACATCTGCTTTAACCTAGCAGTTAAACATCTTTAGATGGTCTAAATCTTTGGCTTGTGCAATTAATTAGTTAACTATCTTGCCAATTTTGCTGCCGGCTTCTTGTGAATGCAAGTATACAGTCAGTGACTAAGCGCCTCTATTacctatttttttaaagtaggtCATCTGAAAGTAATGTCAGGttcatatgtttaaaataagacCACTAGCAGGCTAGTCTCATATTACCAGTTAACTGGCAATGTATCCGCTGCAGAGACTGATTCAGTTTTCTGACGACATACTAAGCAACCAAATAACCTTTTTGCAAGCTACCAAGAGTATTCCTGTCCTCCACATTCCTTATGTGCCGTTGGATGAATCTTCACTGATCCTACAGCTGGAGAGATAGTTGAGCCTGAGACACGGAGACCATGAGTCAGCAGCTGGAATTACTTCTTACTCCTACAGTACGCaggaactatcttcagcatggATTAACTGTTATCACTGCCGGgacagacacaaataaaaaaaatgatttcaggTGAATTAATATAGCAGCAGTGTGGAAAAGTGAtaagggctctggactctgaaatgaaaggttgtgagttcaatcccaggtgggggacacaaCTATTGTGCTTTTCTTAAACATAAACTGCTCCAGTACaaactcagctgtataaattgataattctatgtaaaaatattatgatatattgtaacaatttgtaggtaccctggataagagtgtctgctaagaaataatatgaCACATTGTAACTTGCTGTACAATGTGTCACAGCCTGGAGTTTCTGCCCTCTAACATTTGAAgcgaaaaaaaaacaagacaaaactcACACTGTCCTAATTGATATCTTCTAACAAGGTGCTGCAGTTGGAAATCTAAGTAACAGGTATACATGAAACTCCTTTATCTTCAGTTCACTAGATATTAAGAAATGTTCTGTACTTTTCCCCCTGAGGATAACTGGCTATTTGCTGTGAGTattgtggtgttttttctttttcacctattttgattaattttgatGATGCATATGATAACAATTGTACATCATACATTTTCAAGCATGTACATCCTGGTTTCCAACAGTGTGTTCAGTTGGTAGATAGGACATAACATttgtttcaacatgtttttttttttgttagtttttttaactgAGATGTAAAccagataataaaacaaacctaCAGATAGAAACTATTGTGGATATTCAACTATACAATCACCTCTGTCCCACAGTTTTTAGTtaactataaataaattgaCTACTTTTCATTACACTTGCCTGCTTACAGAAGAGTCTGTGGTAATATGATGATTGATTTCACAGACAAAGAAATTCTTTAGCCACCAGCACTTTTCAAATGGCACTTGTATAccttaacaaataaacaaagtttTGTTTAGAGGACAACAAAAgcaatgatttaatttattttaacatcccCAAAATGTCCCCACTAACcaagtttgtgttaaaaaactgcttgttttaaacattaaacaattatttgaagTATAATGAtactattatataataataataataataataataataataataataataataataataagttccCCATCAGCTCCAAAGGCTATATAGTTGATTTTTTATACTGAAGTTATCAGTATAAAAAATGTGTACTCACCATGTGGAGCAGGTGTCTTTTCGTCAGCTATGTGATCGCAGCATGAAGAATTTGACGATGAATTACTAGAAGTAGAATTGAGCCGAGCTGTAGAACTGATTTCTTGCAAGCAGACAGCCAGCTGATGGAACAGATGCCAttttcaatgttgttgttttctgtggttgAGCAGTGACTGACAAAATCATAAGAAATGTGTTATACTTCATGCATCCAGAACTGCTGTACATTAGTTCAATTGAAAAGGATAGCATACACATacttatattaatttaaacatatacattttgtgttgaaaaaataataagctgTTTGAAATTAATGTCTACAGTCAAAATGGTAAGAGGTTTAACTTAATTCGAAGAAAAAATAGTctgtacagaaaaaataaaaaaatacttacttTTAGTTTTCAACTTCAGTCTCAGAAGGCAACTTTCTGAGGAAGATTGGTTCTCTCCTTCTTTCCTTCTGGGTTGTTGGTGAAGTAGCTACTGAGAGAGCTGATCTGGTGGTTTTATAGAGTTTGGGCAGGGCCGTAAATAGTGGAGTGCAGCCAAACACGTGGACAGAGAGTGCAACAGACAGAAAGGAATTTTCTGTCAACGTGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41716 lncRNA downstream 672422 15254032 ~ 15256023 (-) True G33291
TU41710 lncRNA downstream 743908 15182780 ~ 15184537 (-) True G33285
TU41706 lncRNA downstream 766478 15161712 ~ 15161967 (-) True G33282
TU41689 lncRNA downstream 866094 15061774 ~ 15062351 (-) True G33268
TU41618 lncRNA downstream 1210212 14714791 ~ 14718233 (-) True G33206
TU41877 lncRNA upstream 340859 16272067 ~ 16311866 (-) True G33419
TU41928 lncRNA upstream 687094 16618302 ~ 16618691 (-) True G33461
TU42002 lncRNA upstream 1112810 17044018 ~ 17044239 (-) True G33531
TU42003 lncRNA upstream 1118306 17049514 ~ 17049746 (-) True G33532
TU42004 lncRNA upstream 1118789 17049997 ~ 17054332 (-) True G33533
AMCG00019351 mRNA downstream 63589 15863787 ~ 15864856 (-) True AMCG00019351
AMCG00019348 mRNA downstream 247115 15632482 ~ 15681330 (-) True AMCG00019348
AMCG00019349 mRNA downstream 298444 15628489 ~ 15630001 (-) True AMCG00019349
AMCG00019343 mRNA downstream 377417 15533235 ~ 15551028 (-) True AMCG00019343
AMCG00019340 mRNA downstream 568377 15359700 ~ 15360068 (-) True AMCG00019340
AMCG00019352 mRNA upstream 56955 15988163 ~ 15988928 (-) True AMCG00019352
AMCG00019356 mRNA upstream 459169 16390377 ~ 16421282 (-) True AMCG00019356
AMCG00019355 mRNA upstream 523532 16454740 ~ 16474345 (-) True AMCG00019355
AMCG00019357 mRNA upstream 576430 16507638 ~ 16552225 (-) True AMCG00019357
AMCG00019358 mRNA upstream 785157 16716365 ~ 16760441 (-) True AMCG00019358
TU41832 other downstream 206993 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 936449 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 1370155 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 1436227 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 2263215 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 3511187 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 4812322 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 7216653 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 13586788 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 13614023 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile