RNA id: TU41862



Basic Information


Item Value
RNA id TU41862
length 342
RNA type TUCP
GC content 0.59
exon number 2
gene id G33406
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 16043942 ~ 16081943 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gatgtctcctggatggccgtgagtcggtgtctccccacccgagtgttcatgtacagaaggggcctggccctgtttgacacctgcccctacaagggctgcctgggaagggagacagaggctcacATCTTTAGAGAGTGCCCCTCCGCCtacagggtctggctcctgttttctccgttcctccacaggtttgccgttcctgcgcgggcgaccgcccagcagatcttGTATGGTCCTGCCAGGGGATTAACATCTTCCACCCTGAGgcgctggtggcgtgtcgtctgcgcagttaagcaggccctgtgggagggacggaatatctgtctattcaataagcaggag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU41859 lncRNA upstream 40741 16002796 ~ 16003201 (+) True G33404
TU41845 lncRNA upstream 112741 15928569 ~ 15931201 (+) True G33392
TU41764 lncRNA upstream 416987 15554819 ~ 15626955 (+) True AMCG00019345
TU41737 lncRNA upstream 510746 15484078 ~ 15533196 (+) True G33307
TU41557 lncRNA upstream 1551736 14491892 ~ 14492206 (+) True G33161
TU41864 lncRNA downstream 19015 16100958 ~ 16101159 (+) True G33408
TU41880 lncRNA downstream 284171 16366114 ~ 16366342 (+) True G33422
TU41906 lncRNA downstream 406928 16488871 ~ 16491053 (+) True G33444
TU41910 lncRNA downstream 414898 16496841 ~ 16504076 (+) True G33448
TU41941 lncRNA downstream 716206 16798149 ~ 16800927 (+) True G33474
AMCG00019350 mRNA upstream 338862 15693042 ~ 15705080 (+) True AMCG00019350
AMCG00019346 mRNA upstream 355093 15681904 ~ 15688849 (+) True AMCG00019346
AMCG00019345 mRNA upstream 418047 15605867 ~ 15625895 (+) False AMCG00019345
AMCG00019344 mRNA upstream 462928 15566655 ~ 15581014 (+) True AMCG00019344
AMCG00019347 mRNA upstream 514031 15520426 ~ 15529911 (+) True AMCG00019347
AMCG00019354 mRNA downstream 158439 16240382 ~ 16266099 (+) True AMCG00019354
AMCG00019365 mRNA downstream 411524 16493467 ~ 16856282 (+) True AMCG00019365
AMCG00019361 mRNA downstream 962153 17044096 ~ 17050175 (+) True AMCG00019361
AMCG00019368 mRNA downstream 993727 17075670 ~ 17078562 (+) True AMCG00019368
AMCG00019367 mRNA downstream 1008126 17090069 ~ 17091118 (+) True AMCG00019367
TU41707 other upstream 874101 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 1557236 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 5634445 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 6415280 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 6504731 9261374 ~ 9539211 (+) True G32286
TU42780 other downstream 4525531 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 4525531 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 4525531 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 6533680 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 7590182 23672125 ~ 23695801 (+) True G34511

Expression Profile