RNA id: TU41880


Basic Information

Item Value
RNA id TU41880
length 229
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G33422
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 16366114 ~ 16366342 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggctggcccgtgtggtccaatccaacagacgagctactgtagctcaaattgctgaaaaagttaacgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtatggggctgcgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgccgaaagcacctacaatgggcacgtgagcatcagaactggaccacggagcaatg

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41864 lncRNA upstream 264955 16100958 ~ 16101159 (+) True G33408
TU41859 lncRNA upstream 362913 16002796 ~ 16003201 (+) True G33404
TU41845 lncRNA upstream 434913 15928569 ~ 15931201 (+) True G33392
TU41764 lncRNA upstream 739159 15554819 ~ 15626955 (+) True AMCG00019345
TU41737 lncRNA upstream 832918 15484078 ~ 15533196 (+) True G33307
TU41906 lncRNA downstream 122529 16488871 ~ 16491053 (+) True G33444
TU41910 lncRNA downstream 130499 16496841 ~ 16504076 (+) True G33448
TU41941 lncRNA downstream 431807 16798149 ~ 16800927 (+) True G33474
TU41992 lncRNA downstream 691244 17057586 ~ 17058220 (+) True G33521
TU42066 lncRNA downstream 949331 17315673 ~ 17320035 (+) True G33585
AMCG00019354 mRNA upstream 100015 16240382 ~ 16266099 (+) True AMCG00019354
AMCG00019353 mRNA upstream 235674 15929875 ~ 16130440 (+) True AMCG00019353
AMCG00019350 mRNA upstream 661034 15693042 ~ 15705080 (+) True AMCG00019350
AMCG00019346 mRNA upstream 677265 15681904 ~ 15688849 (+) True AMCG00019346
AMCG00019345 mRNA upstream 740219 15605867 ~ 15625895 (+) False AMCG00019345
AMCG00019365 mRNA downstream 127125 16493467 ~ 16856282 (+) True AMCG00019365
AMCG00019361 mRNA downstream 677754 17044096 ~ 17050175 (+) True AMCG00019361
AMCG00019368 mRNA downstream 709328 17075670 ~ 17078562 (+) True AMCG00019368
AMCG00019367 mRNA downstream 723727 17090069 ~ 17091118 (+) True AMCG00019367
AMCG00019369 mRNA downstream 753006 17119348 ~ 17120947 (+) True AMCG00019369
TU41862 other upstream 284171 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 1196273 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 1879408 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 5956617 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 6737452 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 4241132 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 4241132 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 4241132 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 6249281 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 7305783 23672125 ~ 23695801 (+) True G34511

Expression Profile