RNA id: TU41910



Basic Information


Item Value
RNA id TU41910
length 668
lncRNA type intronic
GC content 0.27
exon number 2
gene id G33448
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 16496841 ~ 16504076 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTTTTTCCCCCGCCtgcacattacaaaatacatcaagtacaaacaaggaaaaaataaatattcttcaCAAAACTTCCTGAGCAAACAATGCATggcatataaattaaatattaacaattacaaataaataagcagaattataaagttttacaagtataatgaatttaaacaaaatgcttgataaaagtttaatttattaaaattacaatttaatgagTTGACtaattttgtataaaataaaacatctcttTGCATTTAGCAAATGATCATTCTGTTGGCAGGTTTGTGTAGActtcattaattgtttaatttcaacTGCACAAAAAGTACTGGCCTATTCTATCAGAACATGTATCAagtttaaatatacaaacattagTTAATGCAACCTAGCTGGGAAAAGAACAAGAAACCCACAAATGAGTTCCCCCAAACCTTGATATAACTAAATGATAatggtaaaatattttgtacaatttatattttgaaaaataattaacactGATACCAAAGGCTCTAATCttgaaaaaatgataaaaatgaatgtttttcttcttctgagatttcaaaatataaattaaatccacacatatgcgtgcacacacacacacacacacatacacacacacatatatatatatatacagtgagggaaaaaaagtatttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU41906 lncRNA upstream 5788 16488871 ~ 16491053 (+) True G33444
TU41880 lncRNA upstream 130499 16366114 ~ 16366342 (+) True G33422
TU41864 lncRNA upstream 395682 16100958 ~ 16101159 (+) True G33408
TU41859 lncRNA upstream 493640 16002796 ~ 16003201 (+) True G33404
TU41845 lncRNA upstream 565640 15928569 ~ 15931201 (+) True G33392
TU41941 lncRNA downstream 294073 16798149 ~ 16800927 (+) True G33474
TU41992 lncRNA downstream 553510 17057586 ~ 17058220 (+) True G33521
TU42066 lncRNA downstream 811597 17315673 ~ 17320035 (+) True G33585
TU42100 lncRNA downstream 918548 17422624 ~ 17424898 (+) False G33615
TU42102 lncRNA downstream 918548 17422624 ~ 17424898 (+) True G33615
AMCG00019354 mRNA upstream 230742 16240382 ~ 16266099 (+) True AMCG00019354
AMCG00019353 mRNA upstream 366401 15929875 ~ 16130440 (+) True AMCG00019353
AMCG00019350 mRNA upstream 791761 15693042 ~ 15705080 (+) True AMCG00019350
AMCG00019346 mRNA upstream 807992 15681904 ~ 15688849 (+) True AMCG00019346
AMCG00019345 mRNA upstream 870946 15605867 ~ 15625895 (+) False AMCG00019345
AMCG00019361 mRNA downstream 540020 17044096 ~ 17050175 (+) True AMCG00019361
AMCG00019368 mRNA downstream 571594 17075670 ~ 17078562 (+) True AMCG00019368
AMCG00019367 mRNA downstream 585993 17090069 ~ 17091118 (+) True AMCG00019367
AMCG00019369 mRNA downstream 615272 17119348 ~ 17120947 (+) True AMCG00019369
AMCG00019370 mRNA downstream 650794 17154870 ~ 17214411 (+) True AMCG00019370
TU41862 other upstream 414898 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 1327000 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 2010135 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 6087344 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 6868179 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 4103398 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 4103398 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 4103398 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 6111547 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 7168049 23672125 ~ 23695801 (+) True G34511

Expression Profile