RNA id: TU41941


Basic Information

Item Value
RNA id TU41941
length 2221
lncRNA type intronic
GC content 0.35
exon number 2
gene id G33474
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 16798149 ~ 16800927 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAATTTGAAACTATGTTTTATGTCTCTTCCTGAGAAGAAAGTGTTATAAACCATAGCACTGATTGCAATTTGTGCAAGAAAACATCCAGGATACCTACAGACTTCAGTATTAGTTACaacatatgaatacattaaatcattCACAACTGAATTTGGAAAATAAGTTATTATCCCAAATTAAGGATTATTAAGCACAGTGATCTGGTTTTCAATAAGGGAATAGTAAGAGACATACAATAGGCTTCAATATAGAAATAATAGTTTGTAATATCTTTGTATGACTGACCTGGTTTGAGATCCAATGCAGTAAGAGACTCTGAATGGAGGAAGTATAAGGTCGGCCCCACAGTAAACAGTACATAATTATCATGTCTTTCATCCAAGATAATAAGAACCAAATCCCCAACCTGAAAACtgaacTCTCTTATAGCTATTTTTTCAGAATGCCGTGAGGACACCGAAGACATGCTCTGAGACATCTGGAAGGGGGATAAGAAAAAGCTATTTAGGTTTTTACTGACGACAAATTGAATGTTCCTACTCACACACATGAACATGCTTAAACTGAATGCTCACTATGGCAATAGACGGTTTCATATGCAGCGTAAGCCCTGCAGCATTTACATAGTGATCTAAATGAAAGAGCAACTCATGGGTCTGAATCCTGATTTGTGATAGGACATTTGTCTAGTTGCACATCGTATAGGCTATGCAGTATCCTTCAGAACACCCCCTACCCTCCCACTCTTAACCCAAGCAGCATGTTAGCAAGCTGTCATTTGGAATGTGACTGTATTGGACCTGATCTTTACAATACCATTTTATTAGACTCATCAGAACGTGAGCTATGAAAAGAAATGTTAAAGGCATGTTATTTAAACCACTTAAGTAACATATAGCAGATGTTTAAAAAATCTGTAACCTGGGAGTTCCGCCTTAAAATTAATCATTACCTACCTTGTTCTGTGACTATACAAAACGGTCCCTTGTGAAATACAGTACGTTAAGAAAACATGCACTTATAAAAATGAGGTGAAGACCAAAAAACAGTATACTACAGTGCAAATTACCCTGAAGCAGTACCAGTCTTCCAAAGCCATCTACTGAAACTATTGTTACCTGACATTGTGTAAGAAAAGAgttatgacaaaaataaagtggATTTTAATACAGCCTGTTAACATTATACAGAATACTTCCTTCTATCAAAATGACAATTCAATTTGATTTGCATTGCCAATGTCTGCTGTTAATTTATGTGTTACCATATGTTTGAATTTATAGTATTTGTGGCAGACTACTATATCTGCAGCTTGTCTATGACTGCATTTTTTGAGCTTTCGGACAAGCTGGATATTattctgatttgtattaatttattagaggATAGTTTTACCCAGGGTTACCTACAGATTTTACAGCAATACACAGTTCCAGAAACATATGACAGTATGGGGAAGAACAAACAATATACAACTTATAAAGTGTAAAATTAAGTATGAGCAAGTATGAAATACAGTGCATTATTCTAGTTAGAGGAAGTCTGGTGGTAGTTcagataaaagaaaatatgaagtGTGGCATGCAGCAGAAATTAAATGGAGCTTGGACAAAATCATGGAGTTAGATCAGTAAATGTGatgtaaaacaatgttcttaatttttttcttagcagatgcgTCCTTTATCTGAACCTTTTCTGAAAGTAGTGGTCAAGGTTTCTTGGAAATAAGGCAGCCTTTTCACTGATCCATGGGATTGATGGAACtggtgcattttaaaatgcaggtttaGTTTGACTGTTTAAGTTAATTATTGGTGTGAAAAGCAAACTCACAAGGTGCCTTCATAAACACCTTCTGTTCTTTACTATATTGTACTTACTATAAACTGCATGATCCCATTTTAGTGCAGTACACATCTAAGAGTGAACTAAATGATAATTACTAAATAAGCTCACAGCTTGTCCACAGAAGTAGCACGCAACTCTCTTCCACAACTAATCTTACAGGAAACAGCAAACATATCTCAGAGTTGCCGTTAATAAACCTTTGatattaggaaaaaaaaaaatatatatatatatatatattatgtcaGAAAGTGCAAAAGGATTTGAAGGATTTGCTTTTGGAGGTGATTAAGACTTAACAGAAGACAGATGGTAATACATTGCTAAACCCGGCTTATGAAATACAGAGTATGTGTACTTGTGGTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41910 lncRNA upstream 294073 16496841 ~ 16504076 (+) True G33448
TU41906 lncRNA upstream 307096 16488871 ~ 16491053 (+) True G33444
TU41880 lncRNA upstream 431807 16366114 ~ 16366342 (+) True G33422
TU41864 lncRNA upstream 696990 16100958 ~ 16101159 (+) True G33408
TU41859 lncRNA upstream 794948 16002796 ~ 16003201 (+) True G33404
TU41992 lncRNA downstream 256659 17057586 ~ 17058220 (+) True G33521
TU42066 lncRNA downstream 514746 17315673 ~ 17320035 (+) True G33585
TU42100 lncRNA downstream 621697 17422624 ~ 17424898 (+) False G33615
TU42102 lncRNA downstream 621697 17422624 ~ 17424898 (+) True G33615
TU42111 lncRNA downstream 621697 17422624 ~ 17424898 (+) False G33615
AMCG00019354 mRNA upstream 532050 16240382 ~ 16266099 (+) True AMCG00019354
AMCG00019353 mRNA upstream 667709 15929875 ~ 16130440 (+) True AMCG00019353
AMCG00019350 mRNA upstream 1093069 15693042 ~ 15705080 (+) True AMCG00019350
AMCG00019346 mRNA upstream 1109300 15681904 ~ 15688849 (+) True AMCG00019346
AMCG00019345 mRNA upstream 1172254 15605867 ~ 15625895 (+) False AMCG00019345
AMCG00019361 mRNA downstream 243169 17044096 ~ 17050175 (+) True AMCG00019361
AMCG00019368 mRNA downstream 274743 17075670 ~ 17078562 (+) True AMCG00019368
AMCG00019367 mRNA downstream 289142 17090069 ~ 17091118 (+) True AMCG00019367
AMCG00019369 mRNA downstream 318421 17119348 ~ 17120947 (+) True AMCG00019369
AMCG00019370 mRNA downstream 353943 17154870 ~ 17214411 (+) True AMCG00019370
TU41862 other upstream 716206 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 1628308 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 2311443 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 6388652 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 7169487 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 3806547 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 3806547 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 3806547 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 5814696 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 6871198 23672125 ~ 23695801 (+) True G34511

Expression Profile