RNA id: TU42003


Basic Information

Item Value
RNA id TU42003
length 233
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G33532
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17049514 ~ 17049746 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTCGGCGAAAGGATTGAGATGTAGTCCTCATATATTAGCCTGGCCTTCTCTTCGATAatacttttgttgttttcttttttaaggtcCTCACAGGCCAGCCAGAAGAGCATGTTCTCCTCGCTAAACTCTGTTCGTAGAAACTCTCGGAAAGCATTCCTCCCACCGGGACTTTTCATCAGCTTGTCGAATGACTGGCCCCAGGTACATACATCTTCCAAAGTTGGGTTCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42002 lncRNA downstream 5275 17044018 ~ 17044239 (-) True G33531
TU41928 lncRNA downstream 430823 16618302 ~ 16618691 (-) True G33461
TU41877 lncRNA downstream 737648 16272067 ~ 16311866 (-) True G33419
TU41846 lncRNA downstream 1118306 15858177 ~ 15931208 (-) False G33393
TU41848 lncRNA downstream 1118306 15928445 ~ 15931208 (-) True G33393
TU42004 lncRNA upstream 251 17049997 ~ 17054332 (-) True G33533
TU42060 lncRNA upstream 253712 17303458 ~ 17303696 (-) True G33579
TU42065 lncRNA upstream 263593 17313339 ~ 17315430 (-) True G33584
TU42067 lncRNA upstream 265802 17315548 ~ 17320145 (-) True G33586
TU42087 lncRNA upstream 275523 17325269 ~ 17326458 (-) True G33603
AMCG00019363 mRNA downstream 43376 16987641 ~ 17006138 (-) True AMCG00019363
AMCG00019366 mRNA downstream 72544 16955890 ~ 16976970 (-) True AMCG00019366
AMCG00019360 mRNA downstream 150447 16891738 ~ 16899067 (-) True AMCG00019360
AMCG00019359 mRNA downstream 205947 16791895 ~ 16843567 (-) True AMCG00019359
AMCG00019358 mRNA downstream 289073 16716365 ~ 16760441 (-) True AMCG00019358
AMCG00019364 mRNA upstream 6226 17055972 ~ 17064681 (-) True AMCG00019364
AMCG00019362 mRNA upstream 18892 17068638 ~ 17075185 (-) True AMCG00019362
AMCG00019372 mRNA upstream 276845 17326591 ~ 17345515 (-) True AMCG00019372
AMCG00019380 mRNA upstream 364460 17414206 ~ 17421484 (-) True AMCG00019380
AMCG00019378 mRNA upstream 372922 17422668 ~ 17424664 (-) True AMCG00019378
TU41832 other downstream 1328062 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 2057518 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 2491224 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 2557296 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 3384284 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 2392649 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 3693784 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 6098115 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 12468250 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 12495485 29545231 ~ 29550162 (-) False AMCG00019556