RNA id: TU42065


Basic Information

Item Value
RNA id TU42065
length 2092
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G33584
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17313339 ~ 17315430 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgCTATTAATATATAGAGTGTTGAAAGTCCCACATTTATTTCCCTTAAAAATACTGTGCATGCACCTATATTTATGGTCAATCACAGCAACTTAAAGCAAGGTTTGTCGTTTTTTCTCATGACTTTGCTAGAATGACTAACTATCTGTAGTTTTATCAGAGCCTAAACTTCTTTTAAAAGGTGTCTGAAGGTTAGTCGAAGTACAATCATACCTGCTCAGCACTTTCCTTTTAAGCACTCTGAAAGATTACTCCAGTCAAAGCAAAACGACCAACTCTTTGTGTGGAAAGTGGAAATGATCTCAGTCTGACAGGATTGTGCAGCCTGACGGTGATTGACTAAGGTTATCTTTGAGGAGCTTTACCAAGAACAGTATGATACAAATTTAAAGGGACAAAAATATTTTAGGGGATCCCAAAAGACTACTAAGTACATGTGCTTGGTTTACAACTATTTAATGTTGTTAACTGAACTATTTCCTACCAGAATCTGCACAGGGGACTTGTAAGTCATCATTGTACTTAACATACTGTTTGTTGGTTAATTTCTAAGTGAGTgtttaaagaaaatcaatgaCACTTTGGAAGAACCATCAGTGCAGTTCTGTTCATGGTAATCTAAGTTTCATTCTCAATTagctttttattataattgtgctGCCtagtgacatttgtttttgttttctttgtttatttgttttttttttctggaaaattAAGGATactcatataattaaatattgatttctatGAGGTAAAGTCTTCAGCCATGCATGGAATAAAATATGTTCTTTCTCTGACACTGCCTGAGAAaagaatgatttaattaattctgcaaATCTAccagttttattaaaacattttcaatcagTAGGCTGTTTTAGACACActaacatatttgtattttggtgTGTGAGGGTGGTGGTTGGGTTTAGATTACAGGCTGTTGGCACTAGTAAAATCTCAGTTACATAGGCAATGATATCTGCAGGAGACACTTTATTTTTGACACTAAGTGATtggcaataattaaaaagctatgGAGCAGATACAAATATGACTATAATTTTATTGCAAATATAGACTGTTTTGGCTTTTTTCTCATAATCAAGACTGGGTGGTTCAAGACAAGCTTCTTGACACAGTAGGTGTTTAGAAAGGCCATCTACCTTACCCTAATGCCCAGCAGCGACAAAGTAAAGCCCTGTGAATTTCATGGGGAAATTGAACAGTTCAATCAATTGGTTCTCAATCAGATACCTGAATCGACAGAAAGATATAACTGAAGAATAACTGAAGTACAGTAATCAATGCATTAACTGATGGATAATTAGCCCTTTATAATAAGGGACAACTAGGCTATAGTTATTCTACAATGGAAAACATTAGCCTAACTGCAACAGAATGTCATGGGCCTAGTATGAtgaagtaattaaattaaatcaagtaaCGTTTATGGGCAGCTTTCAAAACACTATATTTACAACTTTTAATAGAACACATTTAACATCCAGACTGAAAACATGAATGCAAAGACAAGGAACAAGagtgtttttgaaatatattaatgaaaatgttttttaaatgtgtttttttaacaaagggAATATTGTTGAGTAGCAAATCCTATTGTTCCAGctgattattatattaaatgttttattaatcaccagtatttgatattttcataACTTTATTATTCTCCAGATCAGCTTGATCAAAGTGAGGTTCATAGATTTATACATTGTGGCTTCTGACTGAATATAAGGTTTGTTGATCTTGCACATCTACCCATTCATTTTCTAGGACCTTCCATACAAATGATTGAGCTTTCAGGCTCATCCATGTGTGACAATCactgaagtgaaaatgtatgaaCTGCATTTATAAGATTTAAGTTTTAGAAAGAGGGAGATGTGCAACATCAGTACAGAATGAATAGCAGTAAGGGCTCTCTGAATGGGTTCATATCAGTCAGTGCTTTACACTGAGATGAGAATAAAGGCTGGACAAGGAATGGAAAGATAACATTCACACAGTTTTCTGTCCTAGAGAGATTTCcttcaaacaataattaaaagtaagtacattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42060 lncRNA downstream 9643 17303458 ~ 17303696 (-) True G33579
TU42004 lncRNA downstream 259007 17049997 ~ 17054332 (-) True G33533
TU42003 lncRNA downstream 263593 17049514 ~ 17049746 (-) True G33532
TU42002 lncRNA downstream 269100 17044018 ~ 17044239 (-) True G33531
TU41928 lncRNA downstream 694648 16618302 ~ 16618691 (-) True G33461
TU42067 lncRNA upstream 118 17315548 ~ 17320145 (-) True G33586
TU42087 lncRNA upstream 9839 17325269 ~ 17326458 (-) True G33603
TU42135 lncRNA upstream 114876 17430306 ~ 17434591 (-) True G33637
TU42171 lncRNA upstream 308530 17623960 ~ 17624226 (-) True G33665
TU42194 lncRNA upstream 427732 17743162 ~ 17773325 (-) True G33686
AMCG00019362 mRNA downstream 238154 17068638 ~ 17075185 (-) True AMCG00019362
AMCG00019364 mRNA downstream 248658 17055972 ~ 17064681 (-) True AMCG00019364
AMCG00019363 mRNA downstream 307201 16987641 ~ 17006138 (-) True AMCG00019363
AMCG00019366 mRNA downstream 336369 16955890 ~ 16976970 (-) True AMCG00019366
AMCG00019360 mRNA downstream 414272 16891738 ~ 16899067 (-) True AMCG00019360
AMCG00019372 mRNA upstream 11161 17326591 ~ 17345515 (-) True AMCG00019372
AMCG00019380 mRNA upstream 98776 17414206 ~ 17421484 (-) True AMCG00019380
AMCG00019378 mRNA upstream 107238 17422668 ~ 17424664 (-) True AMCG00019378
AMCG00019381 mRNA upstream 122758 17438188 ~ 17440320 (-) True AMCG00019381
AMCG00019379 mRNA upstream 144334 17459764 ~ 17477757 (-) True AMCG00019379
TU41832 other downstream 1591887 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 2321343 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 2755049 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 2821121 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 3648109 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 2126965 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 3428100 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 5832431 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 12202566 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 12229801 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile