RNA id: TU42087


Basic Information

Item Value
RNA id TU42087
length 1190
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G33603
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17325269 ~ 17326458 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTATGCATATAGTTATTCACAGAAGTGTGATGCTAgttacaacatattttaaagtaattaaaaatatcaaatatcattAGAATATTTTAAGCACCCTCAAAGATATACTGCAGTCTCATGCAATCAGTTCTTTATTTAGTACTGAGTGAAATACTAACACAGCATCTTAACAGAGCTTCACATTTCAGCACCTCCACAATGATAAAAAGCATGCAGCCAAGTCAATGACAGCATCTATAAAGGAAGACAAGTGTTGGCATGGTCAGCACAATAATCTTACCTCAGTCCAATTCAAATGCCATGCTTGGATCTGAAGAAGGGGGTGGTTGCCAGGAGCCCAGCAATGTTAAAGCAATCCTGGTGCATTTATGGTGCATGGTGGCCTGAATTGAAGAATGGGTAAAATTTTACAAGACAGATGTTGCAAATGCTGGCAActtatgaaaaagaaagaaaaagcacacacactatatacatagAGCGGTATGACTAGGTCCATGTCTGTGTTGTTATTCTTCTTGCAgtttatgtttaaattgttttgtatcatttacattaacatactgtatttgtttcatgttCGCAATTTTACATCATTCATGAAGAAGAGTCATCGTCATTTTCTTTGACAATTGAAATAGTTACTGCAAATCTAAGGATGGTGAGGTGGGATTATATTTGGCCAGATCTAGCATAGTATTTcataaatctgtgttttaaggGAAAGCTGCTCCACACTGGACCAGACTTTAAGGTGTGTATGTATGGGGCAGCATTCATTTTGGTTCTGATTACCTGGAGTTgtgcagcattttgttttttgttaatataatgAATTTtcacagtaatatatatatgtgtatatgtatttcatatagacatttttaaacaataactgAAAGCggacactttttaaatattttatttacatcttGAGTAGCACTATTATAAACTGACAATTTCATATTAATGCTAGGTAATCTATACAATATGTTAAACACACTGGACAGGGATCTTGCTGTGACTATTTGTGTGAATGTCTATCGGAGACAGTAGATAAATGTTTAtacctgtatatatacatgtatccCCCACATTGTTTGTAATGCTTGTTTTTCTACAAACCTGGAAAttacattgtatatttttttttgtgtgtgtgtcagtcaagTTGCATGACACAGAacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42067 lncRNA downstream 5124 17315548 ~ 17320145 (-) True G33586
TU42065 lncRNA downstream 9839 17313339 ~ 17315430 (-) True G33584
TU42060 lncRNA downstream 21573 17303458 ~ 17303696 (-) True G33579
TU42004 lncRNA downstream 270937 17049997 ~ 17054332 (-) True G33533
TU42003 lncRNA downstream 275523 17049514 ~ 17049746 (-) True G33532
TU42135 lncRNA upstream 103848 17430306 ~ 17434591 (-) True G33637
TU42171 lncRNA upstream 297502 17623960 ~ 17624226 (-) True G33665
TU42194 lncRNA upstream 416704 17743162 ~ 17773325 (-) True G33686
TU42271 lncRNA upstream 852631 18179089 ~ 18198157 (-) True G33758
TU42278 lncRNA upstream 889150 18215608 ~ 18216742 (-) True G33765
AMCG00019362 mRNA downstream 250084 17068638 ~ 17075185 (-) True AMCG00019362
AMCG00019364 mRNA downstream 260588 17055972 ~ 17064681 (-) True AMCG00019364
AMCG00019363 mRNA downstream 319131 16987641 ~ 17006138 (-) True AMCG00019363
AMCG00019366 mRNA downstream 348299 16955890 ~ 16976970 (-) True AMCG00019366
AMCG00019360 mRNA downstream 426202 16891738 ~ 16899067 (-) True AMCG00019360
AMCG00019372 mRNA upstream 133 17326591 ~ 17345515 (-) True AMCG00019372
AMCG00019380 mRNA upstream 87748 17414206 ~ 17421484 (-) True AMCG00019380
AMCG00019378 mRNA upstream 96210 17422668 ~ 17424664 (-) True AMCG00019378
AMCG00019381 mRNA upstream 111730 17438188 ~ 17440320 (-) True AMCG00019381
AMCG00019379 mRNA upstream 133306 17459764 ~ 17477757 (-) True AMCG00019379
TU41832 other downstream 1603817 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 2333273 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 2766979 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 2833051 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 3660039 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 2115937 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 3417072 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 5821403 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 12191538 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 12218773 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile