RNA id: TU42102


Basic Information

Item Value
RNA id TU42102
length 1964
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G33615
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17422624 ~ 17424898 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTATGGGATTGGGGGGgggttgaaaaaaaataaagcacaagcacttttctcttttcaaacTTTTATTAGTTGCATTTATGCGTCTGCGATGGTGACCTCCACCTCCACACCAGGCTCGATGCTGATGGAAGTGATCTGCTTGACGATCTCGGAGGGGCTGTGCAGATCGATCAGGCGCTTGTGGATGCGCATCTGGAAGCGATCCCAGGTCTTGGATCCCTCACCGCAAGGAGTCTTCCTGGTTGTGATGCGCAGAGTCTAAAGCCGGGAAACACAAGAGTCAGTCATTCACCAGAATCCTAACGAGGGATTTTTGGATATTAAGAGCATACCAAATTAAAATACTCAGAAGTGGCTGAACTGTCTAAAGCCGTAAAGATACTAATGAAACTTGACATTAGGTATAATAAACATTAGGGTAAGGGACCACAAATAACTTTGATGTAGGTTTCGTTTATGCAGCAGGTATGGtttccatttcctgtttctcAAATTGTTTTAGAACTACATGAAGCACTAATCCCGAGCCCCCGAAATGCACTTCCTGGCATCTTTTCTGTCCATGTGCCTTGAGGGGTCTCGTCAAAACTACCTTTGCTGGGACAGTTAGAATGACAAATATAATCCACAGCTGCATATGCAGGACAGTTATCAGCCTATTTAGAACTAGTGTCAGAAGACTGGGGCTGATTAAACAGAAATGGACAGAAATAGAAGAGTCAAGGTCAGTTTTGTGGTGTGAAGTAGTAATACAAACATCAACGAATAAGAGAATAGGAGTACAAGTGTATCGTCCAGGTTTCCAATAATACAAAGGATACACGTTCAGGGTGTCTGATCAACGTCAAGTTAAAAACGAAACCCATTGGAGGCAGCCCAATCATTTCAGTGTTTCCCCAACACACAATGCAAAAGGCACTTGGCAAACTCACCTTGGTTGGCATCCGCACCGGCCCCTTGACCTTCAGGTTCTTCTCCTTGGCACCACGGATGAGGTCAGCACACACTTCTCCAGAGACTTGACATTGCGGCTGGTCAGAGTGATCCTGATGCGATGGATGGCAACCTCAGCATCCACAGGGGCCTTGCCGGTGTCCTTAAATGCCTGCAAAACGGAACATGAAGCCGGATGAAGAAGCGCACACAAACCAGCCTGATTTTCACTTATTTAAAGTTATGCCTTGGGAGGTGCGAGATGACTCCATACTGgcggattaaatacaacttgtGTTCGGTAAAGTATTTCTGCATCAGGGATAAAACAAATcctgtatgtatacattatatatacatacatacacactaatatatatatatagtactagATGTCTCGATTATTACAATCATACATGCCATTTCTGTTCGCAGTGTAGCTAACATTACTTAATACACACTTAACCTTCTCTAAATCCGATATAAATACGTTTTCCTCTTCCAATCGCTTGCACCGATTTTCACCCTCTACATACATTTAAGAGCGAATTCATCCGATCCTCTCCTGCAGCACAGGGACTGTCCTGAGGCGGGCAGCGGCTGCACTCAACACGTGTATTGACGCAGGCCTCGGTCACATCTCCGCACGGAAACAGAAACCACACCACACGGGTCTTTAGACAGGACAATTAGACACCCAAACGCAAGCAAGCTTACCATGTTTCAATGTTCCTGACCGACTTATTCGTGTAACAAAAATTCAGGCGAACAGCGGTGAGCCAGGAAGCAAAATGCTGTAACTCTCGTCACTGGAGCTGGTTGAAAGGACGGAACTGCGGCCCGCGATGCCTTTTATATGGAACATACGGGTCCTGTGCGACCTCTGACCCTAAGCAAATTGAACCAATTAGATCGCAGTGACGTATGACAGTCTCTCATCCCAGAGTTCAAACCACATCTGAATGTGATCGTTGTAATGATTGGAAATCTGGATTCTTATTCAAACCATGTAATTTATGTGACCAAAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42066 lncRNA upstream 102589 17315673 ~ 17320035 (+) True G33585
TU41992 lncRNA upstream 364404 17057586 ~ 17058220 (+) True G33521
TU41941 lncRNA upstream 621697 16798149 ~ 16800927 (+) True G33474
TU41910 lncRNA upstream 918548 16496841 ~ 16504076 (+) True G33448
TU41906 lncRNA upstream 931571 16488871 ~ 16491053 (+) True G33444
TU42132 lncRNA downstream 6055 17430953 ~ 17432628 (+) True G33634
TU42143 lncRNA downstream 24422 17449320 ~ 17452659 (+) False AMCG00019376
TU42262 lncRNA downstream 718598 18143496 ~ 18144704 (+) True G33750
TU42312 lncRNA downstream 959986 18384884 ~ 18389982 (+) True G33794
TU42313 lncRNA downstream 970503 18395401 ~ 18395619 (+) True G33795
AMCG00019375 mRNA upstream 6927 17385850 ~ 17415697 (+) True AMCG00019375
AMCG00019371 mRNA upstream 52042 17345622 ~ 17370582 (+) True AMCG00019371
AMCG00019373 mRNA upstream 118758 17298706 ~ 17303866 (+) True AMCG00019373
AMCG00019374 mRNA upstream 206080 17215654 ~ 17216544 (+) True AMCG00019374
AMCG00019370 mRNA upstream 208213 17154870 ~ 17214411 (+) True AMCG00019370
AMCG00019376 mRNA downstream 24453 17449351 ~ 17452653 (+) True AMCG00019376
AMCG00019382 mRNA downstream 203494 17628392 ~ 17636437 (+) True AMCG00019382
AMCG00019388 mRNA downstream 282632 17707530 ~ 17708615 (+) True AMCG00019388
AMCG00019387 mRNA downstream 299525 17724423 ~ 17738652 (+) True AMCG00019387
AMCG00019385 mRNA downstream 335175 17760073 ~ 17764666 (+) True AMCG00019385
TU41862 other upstream 1340681 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 2252783 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 2935918 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 7013127 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 7793962 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 3182576 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 3182576 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 3182576 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 5190725 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 6247227 23672125 ~ 23695801 (+) True G34511

Expression Profile