RNA id: TU42132


Basic Information

Item Value
RNA id TU42132
length 1676
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G33634
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17430953 ~ 17432628 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCttcttgtatatttatttaaacatttcatatactgtatatacagtgagaaCGCTGTAGGCTGTAAAAATCTGCAGCTCTATTGTTTAATAGCAGCAAAgtactataaaaaaacaacaaaaacatgttattcaCCAGACAATAAATAATCTGTCTTTGGATGATGTAAATGTTAGGCCGTTGATGAAAAGCTGCAGCGTTATAATGTAATTTCTATTTTACACAGcttatacacaaatatatatgaattctTTTGTCTATATTTGTACAAATACAACAGtagtttgtaaaatacatttttaagtacaATATACATGATTAGCAACACAAGTTCATTATCACAGGATGGCATTACTGAAATGTGATGAACAAAATCGCAGCTGGAATGCAGTTCCCCTCTTAACAAATCAACtcctccatttctctctcagTTCTTTCAAGCCCCAGAGAGGGTGCTCTTCTGCATCTTCTTGACATTTCCATTCAATAACCTTTAAGGAGTTCTTCAGCACAATAATCCCAACTCATTCCCTCCCGAAAACGCCATTCAGCAGGGAATCCACTTATAGACACCCAGCATATTGAGGGGTATGCACATACTTCCATTGAAGTGCACATGAATACATTGCGATATTACAGATAAGTCCATAAAATACTACAGAAGTCacagtacaaaaatatacaatacaactAAGCACAATCTCTGTCCATTCAGCTTAATTTGAtactttgtaaaaataataataaaaacgttCTGAATGAGAAATAGAGGTCTGTAGCACCACAAGGAGCATTTTGAAGTATACATTAGCAGCTTGATCCAATACCAAAATATTGCAGGAGTGTTTCTTAGATACACATTCAATATGGTTCACTTGTACCACTGACGTTCATACTGAAAGTTTACATGAATTGCTAAAGGTCTGTGCATCTCACAAGAGGCTCCCAGGACTTCAAAAAGCCACTTCCTTCtaaaatgtatgatgtattatatattgaaacaaaGAACCTAGAtcattcaatacaaatatactgcAGAAAGTAGGGTGATATTATTCAATATATGTTgttcatatattatttgattGAGGAATtctctgaaaatgtaaagaagGTTGAGAAGGTGTTTTCAACACATATGACAAAGTCTATATTTATAGAACTGTCCCGGTACTGTGAAGTAATTAACAATTTCCTGAAAAGAgtaaaacactgattttaatgTAGCATATGGAATGTCTATTCCTAGTTagaacaacaggaaaaaaacatggttCGCCAAAACAAGATTAAGTGGAGCAATGCCACtggaaactgtatttttaccaAACTTTGGTACTTCCAAGTAAACTCAGATTTGAAACTTCAGGACAAAACATATTCAGATATGCAAcaccacattaaaaaataggctttaatatttaaaaaatgtgattgaaTGTCACTTATTCCTGGTTTTGgcaaatgtgtttgttgaaaTAAATCCTGCAGGTTACAAATGAATCAATGAATGTACAAAGCAGGAAATGCTTAAATAAGTATAATAGCAACCCTAcaattgtttttcatctttaaatggCTTTACAGGAGTAAAAAGTTATTGTGATTAAAACCTTCTGCATACATTTGTAAAGCCCCAAGTGAGAGACACAGAAGTTTTGTGCAAGTAAAGCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42100 lncRNA upstream 6055 17422624 ~ 17424898 (+) False G33615
TU42102 lncRNA upstream 6055 17422624 ~ 17424898 (+) True G33615
TU42111 lncRNA upstream 6055 17422624 ~ 17424898 (+) False G33615
TU42066 lncRNA upstream 110918 17315673 ~ 17320035 (+) True G33585
TU41992 lncRNA upstream 372733 17057586 ~ 17058220 (+) True G33521
TU42143 lncRNA downstream 16692 17449320 ~ 17452659 (+) False AMCG00019376
TU42262 lncRNA downstream 710868 18143496 ~ 18144704 (+) True G33750
TU42312 lncRNA downstream 952256 18384884 ~ 18389982 (+) True G33794
TU42313 lncRNA downstream 962773 18395401 ~ 18395619 (+) True G33795
TU42314 lncRNA downstream 966388 18399016 ~ 18399743 (+) True G33796
AMCG00019375 mRNA upstream 15256 17385850 ~ 17415697 (+) True AMCG00019375
AMCG00019371 mRNA upstream 60371 17345622 ~ 17370582 (+) True AMCG00019371
AMCG00019373 mRNA upstream 127087 17298706 ~ 17303866 (+) True AMCG00019373
AMCG00019374 mRNA upstream 214409 17215654 ~ 17216544 (+) True AMCG00019374
AMCG00019370 mRNA upstream 216542 17154870 ~ 17214411 (+) True AMCG00019370
AMCG00019376 mRNA downstream 16723 17449351 ~ 17452653 (+) True AMCG00019376
AMCG00019382 mRNA downstream 195764 17628392 ~ 17636437 (+) True AMCG00019382
AMCG00019388 mRNA downstream 274902 17707530 ~ 17708615 (+) True AMCG00019388
AMCG00019387 mRNA downstream 291795 17724423 ~ 17738652 (+) True AMCG00019387
AMCG00019385 mRNA downstream 327445 17760073 ~ 17764666 (+) True AMCG00019385
TU41862 other upstream 1349010 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 2261112 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 2944247 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 7021456 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 7802291 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 3174846 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 3174846 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 3174846 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 5182995 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 6239497 23672125 ~ 23695801 (+) True G34511

Expression Profile