RNA id: TU42135


Basic Information

Item Value
RNA id TU42135
length 4286
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G33637
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17430306 ~ 17434591 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATTAGTTGAACTAAagcattttctgaaataaatcctTTGGTTTCAAAAGTTAGTATGCTACTATTTTGAGAAACAAATTGACATTCCAGTGCGAGAGACTGCAAGTAAAGAATGTAGTAAATAGTAGATTCTGCCATCTAACTGTTTTAATTGGAAGTATCGTGAATTTGACTGGTTAATTAAATTGCTTCCTTCTGAATCAttggtattttaattgataaaaccCATTTTAAGCTTGTAAAGTTTGaacagcactgtgtgtgtttggaagTTGTTGTGGTTGATTGAATGAAATAACCAGGTTTCTGCtgacatttttataatgtatataaagtaCATAGTGTACAAGAAACAATGGTAAAAGAGtataaaatcagaaaacatAGTGATAAGTAATTGTAATGAATGCAATCATGTAACACTATAGTCATCTTAAACTACGTATAATGCCCTTTTGAGACCACATTTGGTACTTTTCAAGTTGTAATGCATTATTTACCCCATTgagttcattattttgtttcattttaatgccaTTTGCCAGTGTCTTCACTACATATAAAGGGAGAAGGGTTTGCAGATAATCTGCAAAGAAGGACCTCACACACAACTCTGAACCTCATTCACTTTTAGTGCAGTGGCACCGGTCTAAACAATCAGTCTGTGCCTTTAGCTTTTTATCAAATTCAGGAAGTTGGCAAAGGCAaggttttgcttgtttgttttggtttttatttttatttttctcttttaggATTGACCATATacagtgaatttatttttttatgttgaacAGATTGCAACCATaatttatcatatatatacatttacgtgtgtgtttgtgtgtgtgtgtgtatttgaaagCAGGCTTTTTGAtgttattactttaaataatttggCTCTAGTAAAATTGGACTGGAAAATTACTTTAGgccatattttcaaatgtaatacagatACAGGCAGTGTTTGCCATGgtaaatttcatttttttttgtaaaactaaataCCATTGATTGAAGCCTTGAAGTGCCTGGTTTTGAGAGGGAAAGTCACATTTGTAGTATGTGCATATGTGTAAGaataaacaaagacatgcaGATGCACGTATCCCTGCACACATGCTGTGAGCTGGGCCATTATttagaaaaagacaaaatgtatatgaaacatTTCACTAAGGGAGAAATATAATCCACATTTGTATCCTTAAGGCTGTGTATTCTAGGTGCTGTCTATGTCAATCATCTTTACAAGctaattacaatttattttcatgcagtATTGGATGGCAACAAAGCCTGTAGTATCACTATCATATCACCATTATCCATGTGGATTTCTAAAACCATGCACCATCCAGTCATTACTGATAATCTAGTCAATCAAAACACTATCCTCCCCCTGGAGTCAGTATACAATAATTGAGCCCATCATGCTCTGTACAGCGCATATACAACTGTTGCATTCCTTTTCGTCCCTTTTAGAAATAATATCCcgatttaattgttattttaataccCTGCGTATGTAAATTagtgtgtttttactttttatgcacacacgtacatatatacatatatataatgagcCACATCTAGTTTTAGAAAGATGAATGAATGTTTTACTCaatgttttttcagttgtttgaaAATGGGTTTTAAATGTGCTATAAGTGTATCTAGAGTATGtggttttacaaaaatgctTGGTAAGCCTCTATATACggcatatttaaattatagcacTTTCTGATATCACATGCCTTTAGGAGTTAAATCTCTCattggcattttttttaaaataaaaaatatatataaacatgttatgTGCCATTAGAATTGTTGTATTTAGCTCTTTAGAATGTTAACAGTTGTATATAAAATGCtaaaaaaggttttttttttttttttttttttttacaggtacagtttttacagtgtttttactATCAAAGTGTCATTTTGCTTTACTTGCACAAAACTTCTGTGTCTCTCACTTGGGGCTTTACAAATGTATGCAGAAGGTTTTAATCACAATAACTTTTTACTCCTGTAAAGccatttaaagatgaaaaacaattgTAGGGTTGCTATTATACTTATTTAAGCATTTCCTGCTTTGTACATTCATTGATTCATTTGTAACCTGCAGGATTTAtttcaacaaacacatttgcCAAAACCAGGAATAAGTGACAttcaatcacattttttaaatattaaagcctattttttaatgtggtgTTGCATATCTGAATATGTTTTGTCCTGAAGTTTCAAATCTGAGTTTACTTGGAAGTACCAAAGTTtggtaaaaatacagtttccaGTGGCATTGCTCCACTTAATCTTGTTTTGGCGaaccatgtttttttcctgttgttctAACTAGGAATAGACATTCCATATGCTAcattaaaatcagtgttttacTCTTTTCAGGAAATTGTTAATTACTTCACAGTACCGGGACAGTTCTATAAATATAGACTTTGTCATATGTGTTGAAAACACCTTCTCAACcttctttacattttcagagaATTCCTCaatcaaataatatatgaacAACATATATTGAATAATATCACCCTACTTTCTgcagtatatttgtattgaatgaTCTAGGTTCtttgtttcaatatataatacatcatacattttaGAAGGAAGTGGCTTTTTGAAGTCCTGGGAGCCTCTTGTGAGATGCACAGACCTTTAGCAATTCATGTAAACTTTCAGTATGAACGTCAGTGGTACAAGTGAACCATATTGAATGTGTATCTAAGAAACACTCCTGCAATATTTTGGTATTGGATCAAGCTGCTAATGTATACTTCAAAATGCTCCTTGTGGTGCTACAGACCTCTATTTCTCATTCAGaacgtttttattattatttttacaaagtaTCAAATTAAGCTGAATGGACAGAGATTGTGCTTagttgtattgtatatttttgtactgtGACTTCTGTAGTATTTTATGGACTTATCTGTAATATCGCAATGTATTCATGTGCACTTCAATGGAAGTATGTGCATACCCCTCAATATGCTGGGTGTCTATAAGTGGATTCCCTGCTGAATGGCGTTTTCGGGAGGGAATGAGTTGGGATTATTGTGCTGAAGAACTCCTTAAAGGTTATTGAATGGAAATGTCAAGAAGATGCAGAAGAGCACCCTCTCTGGGGCTTGAAAGAActgagagagaaatggaggaGTTGATTTGTTAAGAGGGGAACTGCATTCCAGCTGCGATTTTGTTCATCACATTTCAGTAATGCCATCCTGTGATAATGAACTTGTGTTGCTAATCATGTATATtgtacttaaaaatgtattttacaaactaCTGTTGTATTTGTACAAATATAGACAAAagaattcatatatatttgtgtataagCTGTGTAAAATAGAAATTACATTATAACGCTGCAGCTTTTCATCAACGGCCTAACATTTACATCATCCAAAGACAGATTATTTATTGTCTGGtgaataacatgtttttgttgtttttttatagtacTTTGCTGCTATTAAACAATAGAGCTGCAGATTTTTACAGCCTACAGCGttctcactgtatatacagtatatgaaatgtttaaataaatatacaagaaGGATTTAGTGAATGTGTAGAAGTGAAATCTTactatttcaaaaacaaaacaaaaccgctgtgtgtgtatgtgtgcgtgtacgtgtgtgtgtgtgtgtacacatatGTAAGTGCATACGGTGTCATTTCTTTATTCCGTTATACAGGATAAGGAAAAAGGATGGCTAAACCATTGATTTAGGAGAGCGTTAGCAATGAATCTGatcctgtttttaaagatttgttaGTAATCtttggttttactttttaatgggTTTTTTTCCAAACTTTAACAGAAAAGTggataattttatttgtataaagcACAGCTGATATCAGactgtaaaaattaaatgttttttgcatttgtagGATAGAAAAAGGTTGTTAGTACTGATGTTCCTTTTCACTGCTTTCATATTCTACTCATTACAGAACTAATCTTTCAAGACCCTGAAAACTGATAGAGATCATTGTCTTTACAGTACATGTATTCTATCCAGCAAGTTAAAGGAAATTGATTTATTGGGGGGGACACTGTAAGCTGCAACTAAAATTCAGTTTCTATTGAAGGTAATCACACATTATCAACCTGCAAAAATTGTCATAAGTGTATTACAGCAGTAACTGATActaagtgttttatttcttgtgcaATAAAGATGGCAGTG

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42087 lncRNA downstream 103848 17325269 ~ 17326458 (-) True G33603
TU42067 lncRNA downstream 110161 17315548 ~ 17320145 (-) True G33586
TU42065 lncRNA downstream 114876 17313339 ~ 17315430 (-) True G33584
TU42060 lncRNA downstream 126610 17303458 ~ 17303696 (-) True G33579
TU42004 lncRNA downstream 375974 17049997 ~ 17054332 (-) True G33533
TU42171 lncRNA upstream 189369 17623960 ~ 17624226 (-) True G33665
TU42194 lncRNA upstream 308571 17743162 ~ 17773325 (-) True G33686
TU42271 lncRNA upstream 744498 18179089 ~ 18198157 (-) True G33758
TU42278 lncRNA upstream 781017 18215608 ~ 18216742 (-) True G33765
TU42333 lncRNA upstream 950361 18384952 ~ 18386998 (-) False AMCG00019396
AMCG00019378 mRNA downstream 5642 17422668 ~ 17424664 (-) True AMCG00019378
AMCG00019380 mRNA downstream 8822 17414206 ~ 17421484 (-) True AMCG00019380
AMCG00019372 mRNA downstream 84791 17326591 ~ 17345515 (-) True AMCG00019372
AMCG00019362 mRNA downstream 355121 17068638 ~ 17075185 (-) True AMCG00019362
AMCG00019364 mRNA downstream 365625 17055972 ~ 17064681 (-) True AMCG00019364
AMCG00019381 mRNA upstream 3597 17438188 ~ 17440320 (-) True AMCG00019381
AMCG00019379 mRNA upstream 25173 17459764 ~ 17477757 (-) True AMCG00019379
AMCG00019377 mRNA upstream 46732 17481323 ~ 17486099 (-) True AMCG00019377
AMCG00019383 mRNA upstream 178525 17613116 ~ 17621891 (-) True AMCG00019383
AMCG00019391 mRNA upstream 372864 17807455 ~ 17840411 (-) True AMCG00019391
TU41832 other downstream 1708854 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 2438310 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 2872016 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 2938088 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 3765076 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 2007804 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 3308939 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 5713270 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 12083405 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 12110640 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile