RNA id: TU42194


Basic Information

Item Value
RNA id TU42194
length 226
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G33686
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17743162 ~ 17773325 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgaccctgtcgccggttcaccgcttttctttccttggaccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccttgtcaaagtcgctcagatccttatgcttgcccatttttcctgcttctaacacatcaactttgaggacaaaatgttcacttgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42171 lncRNA downstream 118936 17623960 ~ 17624226 (-) True G33665
TU42135 lncRNA downstream 308571 17430306 ~ 17434591 (-) True G33637
TU42087 lncRNA downstream 416704 17325269 ~ 17326458 (-) True G33603
TU42067 lncRNA downstream 423017 17315548 ~ 17320145 (-) True G33586
TU42065 lncRNA downstream 427732 17313339 ~ 17315430 (-) True G33584
TU42271 lncRNA upstream 405764 18179089 ~ 18198157 (-) True G33758
TU42278 lncRNA upstream 442283 18215608 ~ 18216742 (-) True G33765
TU42333 lncRNA upstream 611627 18384952 ~ 18386998 (-) False AMCG00019396
TU42360 lncRNA upstream 832816 18606141 ~ 18615254 (-) True G33830
TU42512 lncRNA upstream 1521487 19294812 ~ 19301547 (-) False AMCG00019417
AMCG00019383 mRNA downstream 121271 17613116 ~ 17621891 (-) True AMCG00019383
AMCG00019377 mRNA downstream 257063 17481323 ~ 17486099 (-) True AMCG00019377
AMCG00019379 mRNA downstream 265405 17459764 ~ 17477757 (-) True AMCG00019379
AMCG00019381 mRNA downstream 302842 17438188 ~ 17440320 (-) True AMCG00019381
AMCG00019378 mRNA downstream 318498 17422668 ~ 17424664 (-) True AMCG00019378
AMCG00019391 mRNA upstream 34130 17807455 ~ 17840411 (-) True AMCG00019391
AMCG00019390 mRNA upstream 123866 17897191 ~ 17911523 (-) True AMCG00019390
AMCG00019392 mRNA upstream 376162 18149487 ~ 18165134 (-) True AMCG00019392
AMCG00019396 mRNA upstream 611542 18384867 ~ 18441981 (-) True AMCG00019396
AMCG00019399 mRNA upstream 809525 18582850 ~ 18590919 (-) True AMCG00019399
TU41832 other downstream 2021710 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 2751166 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 3184872 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 3250944 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 4077932 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 1669070 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 2970205 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 5374536 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 11744671 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 11771906 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile