RNA id: TU42271


Basic Information

Item Value
RNA id TU42271
length 747
lncRNA type inter_gene
GC content 0.43
exon number 6
gene id G33758
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 18179089 ~ 18198157 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaacacacaaaaaaaaaacccaactaATTCATCCCTGATCCAAATGTTCAGATCAAAAACAGTattcacattttacatacaatacaatagttACAACTTAAATAGCAATTACCTCTTCTACATTGGAAGCTGTTTTAGCAGAGGTTTCCATAAAGATAAGACCGTGTTCTCTGGCAAAGGcctctccttcctctttctTCACCTCTCTCCGTGACTCCAGATCACTCTTGTTTCCGATGAGCATGATGACCATATTGGAGTTGGAATGTTGGCGTGCATCTTCTAACCAGGTCGTCAAGTGGTTAAAGGTGTCCCTTCTTGTGATATCATAAACTAAGAGAGCTCCAGCAGCACCACGGTAGTAGGACCTTGTGATGGACCTGAAAgactcctggccggcAGTATCCCAGATTTGAAGTTTTATCTGTTTTCCATCAATAGTGATCATTCGTGCCCCAAATTCTACACCAATAGTGAGGTCATGAACAGGTTGAAACCTCTTATCTGTgaactgtaataataaacatgatttCCCCactcCCGTGTCTCCGATAATGATGTATTTGAAGAGATAAGCGTACGCCATAGCCGCTGTGATGCTGCTTCTAGCTGTTTTGCTCTTTTTTCACTCTCCCCGTTTCTTGTATAGCTATGAAAAATGCCTGTATTGTGAGTCGCCCTCCGCTTTGccagtctctttctctccccgACGAGAAGGAACAATAAACACCTCCGAGCTCCGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42194 lncRNA downstream 405764 17743162 ~ 17773325 (-) True G33686
TU42171 lncRNA downstream 554863 17623960 ~ 17624226 (-) True G33665
TU42135 lncRNA downstream 744498 17430306 ~ 17434591 (-) True G33637
TU42087 lncRNA downstream 852631 17325269 ~ 17326458 (-) True G33603
TU42067 lncRNA downstream 858944 17315548 ~ 17320145 (-) True G33586
TU42278 lncRNA upstream 17451 18215608 ~ 18216742 (-) True G33765
TU42333 lncRNA upstream 186795 18384952 ~ 18386998 (-) False AMCG00019396
TU42360 lncRNA upstream 407984 18606141 ~ 18615254 (-) True G33830
TU42512 lncRNA upstream 1096655 19294812 ~ 19301547 (-) False AMCG00019417
TU42513 lncRNA upstream 1096655 19294812 ~ 19301547 (-) True AMCG00019417
AMCG00019392 mRNA downstream 13955 18149487 ~ 18165134 (-) True AMCG00019392
AMCG00019390 mRNA downstream 267566 17897191 ~ 17911523 (-) True AMCG00019390
AMCG00019391 mRNA downstream 338678 17807455 ~ 17840411 (-) True AMCG00019391
AMCG00019383 mRNA downstream 557198 17613116 ~ 17621891 (-) True AMCG00019383
AMCG00019377 mRNA downstream 692990 17481323 ~ 17486099 (-) True AMCG00019377
AMCG00019396 mRNA upstream 186710 18384867 ~ 18441981 (-) True AMCG00019396
AMCG00019399 mRNA upstream 384693 18582850 ~ 18590919 (-) True AMCG00019399
AMCG00019398 mRNA upstream 396826 18594983 ~ 18605836 (-) True AMCG00019398
AMCG00019404 mRNA upstream 623006 18821163 ~ 18833805 (-) True AMCG00019404
AMCG00019403 mRNA upstream 790749 18988906 ~ 19004537 (-) True AMCG00019403
TU41832 other downstream 2457637 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 3187093 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 3620799 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 3686871 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 4513859 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 1244238 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 2545373 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 4949704 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 11319839 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 11347074 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile