RNA id: TU42278


Basic Information

Item Value
RNA id TU42278
length 1135
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G33765
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 18215608 ~ 18216742 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTGAATTGGTTTATTTAGTGATTTGCAGATTGTTTGACAGGACGCTTGAAGATGTTAATGAGAGTTGTAGTTGAACAATCAGATGCTGTGCTCAGTGGTTCTTTCAATATGAATACTATAATGAGGACCATAGACAATTTATAACACATTCTGAGTTCCCACAGATATGACAATAAATCCCATTTGGACAGCCAAATATATATGACAAGATGGCACTTGtagtaaatgaaaaataaaggcagaattttaatccatttttaaatttgtacttATGATATGTACTTTTCAGAATCTTTAAAAcgaatatattttcagtttaatccTTTGTACTACTGCTTTAAGGACGCTGgtattgaataaatatattattcttttttttttgttacatttagatttagaaagGTGGGTGCATAAAAGTGGTAAGACAATATACAAAATAGGTCAGTTCTTGAGTTTTACACATTAATACACATGATTGTATTAAAATAGTAGTTTCATATATTGCCTTTAAATCCGTGTAGAAGGCGTTACTCTAGAACACACCTAGGCACCCGTGTGACGTGGACACTCGTCAATGGCTTTGTGGATACACAGCTCGCGTTCGTGcggcgcagatgtccgcagtcctgcgcgggtctgcgctgctccgccaatgggatcggtgggattctgcagaccTGCGCAGACCTGCGATCATACCGCTGGCATTCTTTTGACTAGAAACAGATCTCCAGGAGTTGTGTACACTGTCCGCCTGTTGTGCACTAAAAGTCCTTAGCGTTTCCGAGCAAATCCAGATTCCTGGCGGTAGAGTGCACTACGCTACTGTGTGGTAAATagtcatgttttaaatgttgcgCCACTGAAGCCCCCGCGTCCGCCACGCGCGAGCACGCTCCCCCGAATCCCCCGAGGCGCGAGCTGTGCACGGGGCTGcctgtccgtccgtccgtccgtccgtccgtccacACAGACACTTTCGCAAAAGTAACTGCAACGTGTGCACTCTGCACAGCACGATGACGTCGAGTAAGGTAGTTGTTATTTTACAACAAGTTGCCTCCTCTGGATTCAAGCCAATCCTGTTTACGCAGACGACACACCGCCCCTGTTGCCCGGATGTTACTTTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42271 lncRNA downstream 17451 18179089 ~ 18198157 (-) True G33758
TU42194 lncRNA downstream 442283 17743162 ~ 17773325 (-) True G33686
TU42171 lncRNA downstream 591382 17623960 ~ 17624226 (-) True G33665
TU42135 lncRNA downstream 781017 17430306 ~ 17434591 (-) True G33637
TU42087 lncRNA downstream 889150 17325269 ~ 17326458 (-) True G33603
TU42333 lncRNA upstream 168210 18384952 ~ 18386998 (-) False AMCG00019396
TU42360 lncRNA upstream 389399 18606141 ~ 18615254 (-) True G33830
TU42512 lncRNA upstream 1078070 19294812 ~ 19301547 (-) False AMCG00019417
TU42513 lncRNA upstream 1078070 19294812 ~ 19301547 (-) True AMCG00019417
TU42514 lncRNA upstream 1078070 19294812 ~ 19301547 (-) False AMCG00019417
AMCG00019392 mRNA downstream 50474 18149487 ~ 18165134 (-) True AMCG00019392
AMCG00019390 mRNA downstream 304085 17897191 ~ 17911523 (-) True AMCG00019390
AMCG00019391 mRNA downstream 375197 17807455 ~ 17840411 (-) True AMCG00019391
AMCG00019383 mRNA downstream 593717 17613116 ~ 17621891 (-) True AMCG00019383
AMCG00019377 mRNA downstream 729509 17481323 ~ 17486099 (-) True AMCG00019377
AMCG00019396 mRNA upstream 168125 18384867 ~ 18441981 (-) True AMCG00019396
AMCG00019399 mRNA upstream 366108 18582850 ~ 18590919 (-) True AMCG00019399
AMCG00019398 mRNA upstream 378241 18594983 ~ 18605836 (-) True AMCG00019398
AMCG00019404 mRNA upstream 604421 18821163 ~ 18833805 (-) True AMCG00019404
AMCG00019403 mRNA upstream 772164 18988906 ~ 19004537 (-) True AMCG00019403
TU41832 other downstream 2494156 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 3223612 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 3657318 14491891 ~ 14558290 (-) False G33163
TU41559 other downstream 3723390 14491891 ~ 14492218 (-) True G33163
TU41485 other downstream 4550378 13662116 ~ 13665230 (-) True G33106
TU42573 other upstream 1225653 19442395 ~ 19448573 (-) True AMCG00019419
TU42823 other upstream 2526788 20743530 ~ 20765496 (-) True AMCG00019446
TU43148 other upstream 4931119 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 11301254 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 11328489 29545231 ~ 29550162 (-) False AMCG00019556

Expression Profile