RNA id: TU42335



Basic Information


Item Value
RNA id TU42335
length 271
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G33810
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 18451133 ~ 18451403 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cccgCTTGTTCTGTTTGATGGGCGCAGTCCATGCGTATTGAAGGCGGTTTGTtcatatctttgtaaatactttgtataagatgagaagtagactaatgggcctatagttcttcGGATCTaatttgtctcctttcttgtgaaagagaaagacagttatattgttccatttatctggtatttgtttaaaGGTTCAGCCAGAatcttctccatttcttctccagcttcttttaGTATCTGGACTGTAATTCTATAATCTCCAggtgtttttcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU42334 lncRNA upstream 292 18450617 ~ 18450841 (+) True G33809
TU42319 lncRNA upstream 12868 18431364 ~ 18438265 (+) True G33800
TU42314 lncRNA upstream 51390 18399016 ~ 18399743 (+) True G33796
TU42313 lncRNA upstream 55514 18395401 ~ 18395619 (+) True G33795
TU42312 lncRNA upstream 61151 18384884 ~ 18389982 (+) True G33794
TU42339 lncRNA downstream 125092 18576495 ~ 18583704 (+) True G33812
TU42411 lncRNA downstream 475644 18927047 ~ 18927287 (+) True G33874
TU42421 lncRNA downstream 553621 19005024 ~ 19016309 (+) False AMCG00019402
TU42419 lncRNA downstream 560839 19012242 ~ 19021412 (+) True AMCG00019402
TU42459 lncRNA downstream 755791 19207194 ~ 19209710 (+) True G33913
AMCG00019395 mRNA upstream 73078 18337551 ~ 18378055 (+) True AMCG00019395
AMCG00019393 mRNA upstream 154912 18257809 ~ 18296221 (+) True AMCG00019393
AMCG00019394 mRNA upstream 211520 18231215 ~ 18239613 (+) True AMCG00019394
AMCG00019389 mRNA upstream 244007 18179249 ~ 18207126 (+) True AMCG00019389
AMCG00019386 mRNA upstream 646688 17799605 ~ 17804445 (+) True AMCG00019386
AMCG00019400 mRNA downstream 65736 18517139 ~ 18525098 (+) True AMCG00019400
AMCG00019397 mRNA downstream 156346 18607749 ~ 18661468 (+) True AMCG00019397
AMCG00019401 mRNA downstream 359477 18810880 ~ 18811692 (+) True AMCG00019401
AMCG00019402 mRNA downstream 555203 19006606 ~ 19016294 (+) False AMCG00019402
AMCG00019408 mRNA downstream 630316 19081719 ~ 19089121 (+) True AMCG00019408
TU41862 other upstream 2369190 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 3281292 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 3964427 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 8041636 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 8822471 9369898 ~ 9628662 (+) True G32293
TU42780 other downstream 2156071 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 2156071 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 2156071 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 4164220 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 5220722 23672125 ~ 23695801 (+) True G34511

Expression Profile