RNA id: TU42861


Basic Information

Item Value
RNA id TU42861
length 273
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G34235
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 21090144 ~ 21090416 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacccgcccactccagctcatccagaactctgcggctcatttggtattctctctgccacgattcgcacacgctaccccactgctccgctccctccactggctcctgataccggcacgcattcagttcaagacattgaccctcacctaccgctgtctcgaccacacagcaccaagctaccttcagaccctcgtctctccatacatcccctccagaccactgcgctcctccagtgccagaagactaactctgcctcctctccactctccttcctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42825 lncRNA upstream 313528 20771526 ~ 20776616 (+) True G34204
TU42811 lncRNA upstream 343173 20672987 ~ 20746971 (+) True G34192
TU42802 lncRNA upstream 454872 20633077 ~ 20635272 (+) True G34183
TU42789 lncRNA upstream 479255 20607474 ~ 20610889 (+) False G34170
TU42682 lncRNA upstream 993694 20095318 ~ 20096450 (+) True G34093
TU42916 lncRNA downstream 371266 21461682 ~ 21461891 (+) True G34278
TU43038 lncRNA downstream 1485558 22575974 ~ 22577472 (+) True G34378
TU43105 lncRNA downstream 1689815 22780231 ~ 22783116 (+) True G34432
TU43106 lncRNA downstream 1698592 22789008 ~ 22789463 (+) True G34433
TU43108 lncRNA downstream 1708984 22799400 ~ 22799718 (+) True G34435
AMCG00019454 mRNA upstream 101024 20977933 ~ 20989120 (+) True AMCG00019454
AMCG00019455 mRNA upstream 135098 20952419 ~ 20955046 (+) True AMCG00019455
AMCG00019453 mRNA upstream 211330 20874430 ~ 20878814 (+) True AMCG00019453
AMCG00019450 mRNA upstream 311228 20777256 ~ 20778916 (+) True AMCG00019450
AMCG00019441 mRNA upstream 464107 20612346 ~ 20626037 (+) True AMCG00019441
AMCG00019459 mRNA downstream 110447 21200863 ~ 21209681 (+) True AMCG00019459
AMCG00019460 mRNA downstream 240846 21331262 ~ 21331771 (+) True AMCG00019460
AMCG00019464 mRNA downstream 799647 21890063 ~ 21893971 (+) True AMCG00019464
AMCG00019463 mRNA downstream 804461 21894877 ~ 21899711 (+) True AMCG00019463
AMCG00019472 mRNA downstream 1015745 22106161 ~ 22108328 (+) True AMCG00019472
TU42780 other upstream 479255 20607474 ~ 20610889 (+) False G34170
TU42783 other upstream 479255 20607474 ~ 20610889 (+) True G34170
TU42785 other upstream 479255 20607474 ~ 20610889 (+) False G34170
TU41862 other upstream 5008201 16043942 ~ 16081943 (+) True G33406
TU41707 other upstream 5920303 15164348 ~ 15169841 (+) True G33283
TU43058 other downstream 1525207 22615623 ~ 22625205 (+) False AMCG00019475
TU43194 other downstream 2581709 23672125 ~ 23695801 (+) True G34511
TU43819 other downstream 8210539 29300955 ~ 29304646 (+) False AMCG00019551
TU44375 other downstream 11233984 32324400 ~ 32327276 (+) True AMCG00019609
TU44379 other downstream 11240221 32330637 ~ 32392976 (+) False AMCG00019609

Expression Profile