RNA id: TU42921


Basic Information

Item Value
RNA id TU42921
length 317
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G34283
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 21546208 ~ 21546524 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcactgtgccgtttggtatcattgtgtgcaccacactgaacatggaccagagaaagcaaaggaaagagttgtctgaggagatcagaaagaaaataatagacaagcatggtaaaggtaaaggctacaagaccatctccaagcagcttgatgttcctgtgacaacagttgcaaatattattaagaagttcaaggtccatggaactgtagccaacctccctgggctacagggaggaaaatcgaccccagattgaacagaaggatagtgcgaatggcagaaaaagaaccaaggataactgccaaagagatacaagctgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42915 lncRNA downstream 108052 21437915 ~ 21438156 (-) True G34277
TU42753 lncRNA downstream 996508 20478257 ~ 20549700 (-) True G34148
TU42577 lncRNA downstream 2065240 19467076 ~ 19480968 (-) True G34006
TU42512 lncRNA downstream 2244661 19294812 ~ 19301547 (-) False AMCG00019417
TU43098 lncRNA upstream 1161421 22707945 ~ 22719120 (-) False AMCG00019487
TU43099 lncRNA upstream 1161421 22707945 ~ 22744182 (-) True AMCG00019487
TU43145 lncRNA upstream 1572277 23118801 ~ 23120960 (-) True G34468
TU43155 lncRNA upstream 1663717 23210241 ~ 23286999 (-) True G34476
TU43184 lncRNA upstream 2030003 23576527 ~ 23578285 (-) True G34502
AMCG00019458 mRNA downstream 137378 21407461 ~ 21408830 (-) True AMCG00019458
AMCG00019457 mRNA downstream 252471 21246788 ~ 21293737 (-) True AMCG00019457
AMCG00019456 mRNA downstream 303534 21234768 ~ 21242674 (-) True AMCG00019456
AMCG00019451 mRNA downstream 677043 20862132 ~ 20869165 (-) True AMCG00019451
AMCG00019452 mRNA downstream 722451 20820716 ~ 20823757 (-) True AMCG00019452
AMCG00019462 mRNA upstream 111741 21658265 ~ 21658930 (-) True AMCG00019462
AMCG00019461 mRNA upstream 323491 21870015 ~ 21872862 (-) True AMCG00019461
AMCG00019474 mRNA upstream 658463 22204987 ~ 22216671 (-) True AMCG00019474
AMCG00019473 mRNA upstream 1021419 22567943 ~ 22580204 (-) True AMCG00019473
AMCG00019476 mRNA upstream 1042009 22588533 ~ 22590655 (-) True AMCG00019476
TU42823 other downstream 780712 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 2097635 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 5824756 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 6554212 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 6987918 14491891 ~ 14558290 (-) False G33163
TU43148 other upstream 1601337 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 7971472 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 7998707 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 8092042 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 8132705 29679229 ~ 29685302 (-) True G35101

Expression Profile