RNA id: TU43145


Basic Information

Item Value
RNA id TU43145
length 455
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G34468
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 23118801 ~ 23120960 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aattaaattaaaatatacactcacctaaaggattattaggaacaccatactaatactgtgtttgaccccctttcaccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttagaaatgttggcccatattgataggataggatcttgcagttgatggagatttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgttctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattccacctttgtgacatggtgcattatcctgctggaagtagccatcagaggatgggtacatggtggtcatgGGTAcaagggatggacatggtcagaaacaatgctcaggtaggccgtggcatttaaaT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43099 lncRNA downstream 374619 22707945 ~ 22744182 (-) True AMCG00019487
TU43098 lncRNA downstream 399681 22707945 ~ 22719120 (-) False AMCG00019487
TU42921 lncRNA downstream 1572277 21546208 ~ 21546524 (-) True G34283
TU42915 lncRNA downstream 1680645 21437915 ~ 21438156 (-) True G34277
TU42753 lncRNA downstream 2569101 20478257 ~ 20549700 (-) True G34148
TU43155 lncRNA upstream 89281 23210241 ~ 23286999 (-) True G34476
TU43184 lncRNA upstream 455567 23576527 ~ 23578285 (-) True G34502
TU43198 lncRNA upstream 489469 23610429 ~ 23642241 (-) True G34514
TU43225 lncRNA upstream 777313 23898273 ~ 23947457 (-) True G34541
TU43254 lncRNA upstream 931063 24052023 ~ 24058794 (-) False AMCG00019500
AMCG00019483 mRNA downstream 143673 22955778 ~ 22975128 (-) True AMCG00019483
AMCG00019485 mRNA downstream 230329 22877285 ~ 22888472 (-) True AMCG00019485
AMCG00019484 mRNA downstream 274262 22830147 ~ 22844539 (-) True AMCG00019484
AMCG00019487 mRNA downstream 375009 22670647 ~ 22743792 (-) False AMCG00019487
AMCG00019486 mRNA downstream 475249 22642650 ~ 22643552 (-) True AMCG00019486
AMCG00019482 mRNA upstream 91103 23212063 ~ 23226396 (-) True AMCG00019482
AMCG00019490 mRNA upstream 493167 23614127 ~ 23619816 (-) True AMCG00019490
AMCG00019491 mRNA upstream 499188 23620148 ~ 23622993 (-) True AMCG00019491
AMCG00019489 mRNA upstream 549570 23670530 ~ 23674685 (-) True AMCG00019489
AMCG00019501 mRNA upstream 880240 24001200 ~ 24011054 (-) True AMCG00019501
TU42823 other downstream 2353305 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 3670228 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 7397349 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 8126805 14951842 ~ 14991996 (-) True G33259
TU41560 other downstream 8560511 14491891 ~ 14558290 (-) False G33163
TU43148 other upstream 26901 23147861 ~ 23199608 (-) True G34470
TU43838 other upstream 6397036 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 6424271 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 6517606 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 6558269 29679229 ~ 29685302 (-) True G35101

Expression Profile