RNA id: TU43155


Basic Information

Item Value
RNA id TU43155
length 976
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G34476
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 23210241 ~ 23286999 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agactgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccttgtcaaagtcgctcagatccttacacttgcccatttttcctgcttctaacacataaaactttgaggacaaaatgttcacttgctgcctaatatatcccacccactgaccggtgccatgataacgagattataagtgttattcacttcacctgtcagcggtcataatgttacggctgatcggtgtatatatgtgtgatttacagtgagaaataaattaatgaaaacacacgtgatggtgttttttaaaattaatatacagtatatgtatttactgaaaacaagaagatTCATAACCCGCATTTATTAGAGACCGCCTTTAGTGTACCTGATTATGCAGATCAACCCAGCGACTGTTGGAGACCGGCTGCTATTTGCTATTTCGAGAATTGCAAGTCTCTTCTGCTGTGCATTCCAGGTGTAGAACAATAAAAGAGGACAAACTGCACCTAGACATAGGTTTGAAGTACTGCTGGAGATaaccttttaaatgtgttaaaatggtTTGTGGGTTACAGGTTGGTATTTCACATGTTTATGCAAGTAGAACACTGTTAATGCTGTTAAACCCTGTTTTAAGGTACAGCTTGTTTTGTCTGAAGATCAATCTGACATGGTTGCTTAATCTTGAAGTAATGTGCATGCAACGCATATTCAAATAATTACCTAATTAATTTGTGTATCCTAAATAAGTGGTATATTTTGATGTCACATATATGTCcttgtgtctttatttattctgtttgtgaataataatatgtatttaatcctTATGGCAGTCTAAGCAGACCTACTTTGAAAGACTAAAACCCTGTCAGACTGCTCACCTGtagttttaaatcaaacacctgccataaaaaatgtaattaattaacagGATAATAAAGTAAGCTGTAGCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43145 lncRNA downstream 89281 23118801 ~ 23120960 (-) True G34468
TU43099 lncRNA downstream 466059 22707945 ~ 22744182 (-) True AMCG00019487
TU43098 lncRNA downstream 491121 22707945 ~ 22719120 (-) False AMCG00019487
TU42921 lncRNA downstream 1663717 21546208 ~ 21546524 (-) True G34283
TU42915 lncRNA downstream 1772085 21437915 ~ 21438156 (-) True G34277
TU43184 lncRNA upstream 289528 23576527 ~ 23578285 (-) True G34502
TU43198 lncRNA upstream 323430 23610429 ~ 23642241 (-) True G34514
TU43225 lncRNA upstream 611274 23898273 ~ 23947457 (-) True G34541
TU43254 lncRNA upstream 765024 24052023 ~ 24058794 (-) False AMCG00019500
TU43287 lncRNA upstream 859195 24146194 ~ 24146851 (-) True G34596
AMCG00019483 mRNA downstream 235113 22955778 ~ 22975128 (-) True AMCG00019483
AMCG00019485 mRNA downstream 321769 22877285 ~ 22888472 (-) True AMCG00019485
AMCG00019484 mRNA downstream 365702 22830147 ~ 22844539 (-) True AMCG00019484
AMCG00019487 mRNA downstream 466449 22670647 ~ 22743792 (-) False AMCG00019487
AMCG00019486 mRNA downstream 566689 22642650 ~ 22643552 (-) True AMCG00019486
AMCG00019490 mRNA upstream 327128 23614127 ~ 23619816 (-) True AMCG00019490
AMCG00019491 mRNA upstream 333149 23620148 ~ 23622993 (-) True AMCG00019491
AMCG00019489 mRNA upstream 383531 23670530 ~ 23674685 (-) True AMCG00019489
AMCG00019501 mRNA upstream 714201 24001200 ~ 24011054 (-) True AMCG00019501
AMCG00019500 mRNA upstream 765012 24052011 ~ 24094664 (-) True AMCG00019500
TU43148 other downstream 10633 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 2444745 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 3761668 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 7488789 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 8218245 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 6230997 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 6258232 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 6351567 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 6392230 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 8935065 32222064 ~ 32233398 (-) True G35476

Expression Profile