RNA id: TU43184


Basic Information

Item Value
RNA id TU43184
length 1759
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G34502
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 23576527 ~ 23578285 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atcattatgttttttgcaagattatttttctgcagatttgtattagacaatattaaaatatatttttttacccaattatatttgtatttattggatcaaaagtattcacacccaaAACTCAATTAATGTATAGAGCAGCAGTCAAAAGAACCCTTTTAAATTAGTTGAGAGACCTGGAATATCCACAGTTTTGTCAAGGCTGAATCAACATACTATGAAAATATATCACAGATAAACATCCATTAAGCTAAATTAACAAGTGAAAGATGTGCATACAGCTGCATATAtaaagtatgtaaaaaaaaacatatatacaaaccCAAAAGCTAGCATACATACtatgctttgtgtgtgtggaattgCCTTTTGGGGTTAAAATGCATATCAAAAGAGCAATAGCAAGAGAAATTATgcgttttttcattttttacatgcaaacctgttttgtattttggagtagatatgcacacacattcattatttagttttaatgaaacaatacaataaaacagtttaGCAACTCAAACCTTCAACAAACTGCTCATTCCATAAGAAAAAAactaagcaaaaaaaacaaaaaaaaaacatgaatcaatCTTAGATTAGAAAGTGATTTcctgcaaaatatttaattaagccAGAGTGATGAAAAAAGGTATGACTTTATAGAAGGTTTCAGCCCACTTGGGGTACGTTTTGCCTCAGGCACAGCTCATTCAAGTAGGTTAAAGCCAGAATACATAACCATCTTTGGAGTCATTACTAGGATTAGTGCATAATTTGCCTCAAAGTTGTACAGTTCTACTAGGGTTTGTTACAGTTTACAGCTGTCTTAAGAAGGAGCAGGGAGATTATCATGGGATGTCTGCCAATCACAAGCCCCCTCCCCCTGCTGTCACAAGGTCTCCTTGATCGTTTGTAAAATTTCATCAACAGGAATgaatgataaaaaaatgtaaaagagcGAGAAAAAAACAGCTACACAAAATAATCTGAATCTGCACAGTACAATTCCTTATTCATGTATGGGGAATAGGTGTCGATAAATTAAtttagatgtgtttttatttaatatattattttatttcccatgaTATATAACCCCAATCAGTGCTATGCAGAAGATGTTTAATTAcctatcaataaaataaacatgatgctCTTTATTTTGCCTTGGACAACATTATATCCAACATTAAGTTAGTCAAGGAAGTATCTTCATGGAAATAGGGTTTTGTGGGGTTGCTACATTAATGTATTCAACAAACATGGtagaaaatatatagtttagAACTACAAGattatttagaaatgcatttaaaaaatgtacatacaataTCTGTCTTAGAAATCCCTTCATCTGCTGAATTTCATAATAAATGAGAAGTATGTGAACTGAAAACAGAACTGCAAATTAAAAGCTATGCGGTGTGAGACTAAATCAAATGGCAAATGTCTGTACAATTTCCcaagtttcttaaaaaaaaaaaaaaaaaaaatgaattttaataattgttcAAACCAGGGGTGCCCAGATTTTAGTGGCATGGGATCTCCTTTTCCCACAGTCATCCCAGCAATGTCTATCAGCACAGCGTCTTCCCTACCCCACAGAGACATTCAAACAGGATGCACGATAGATGCCTAATGTCTGGTTATAGattcatgtaattttttttttaccaaaaacACTCCTGCAGACTATTatgcaaaggctgtgaataaatgtcctttctttcatttttatttagatgtaGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43155 lncRNA downstream 289528 23210241 ~ 23286999 (-) True G34476
TU43145 lncRNA downstream 455567 23118801 ~ 23120960 (-) True G34468
TU43099 lncRNA downstream 832345 22707945 ~ 22744182 (-) True AMCG00019487
TU43098 lncRNA downstream 857407 22707945 ~ 22719120 (-) False AMCG00019487
TU42921 lncRNA downstream 2030003 21546208 ~ 21546524 (-) True G34283
TU43198 lncRNA upstream 32144 23610429 ~ 23642241 (-) True G34514
TU43225 lncRNA upstream 319988 23898273 ~ 23947457 (-) True G34541
TU43254 lncRNA upstream 473738 24052023 ~ 24058794 (-) False AMCG00019500
TU43287 lncRNA upstream 567909 24146194 ~ 24146851 (-) True G34596
TU43480 lncRNA upstream 1933799 25512084 ~ 25515224 (-) True G34763
AMCG00019482 mRNA downstream 350131 23212063 ~ 23226396 (-) True AMCG00019482
AMCG00019483 mRNA downstream 601399 22955778 ~ 22975128 (-) True AMCG00019483
AMCG00019485 mRNA downstream 688055 22877285 ~ 22888472 (-) True AMCG00019485
AMCG00019484 mRNA downstream 731988 22830147 ~ 22844539 (-) True AMCG00019484
AMCG00019487 mRNA downstream 832735 22670647 ~ 22743792 (-) False AMCG00019487
AMCG00019490 mRNA upstream 35842 23614127 ~ 23619816 (-) True AMCG00019490
AMCG00019491 mRNA upstream 41863 23620148 ~ 23622993 (-) True AMCG00019491
AMCG00019489 mRNA upstream 92245 23670530 ~ 23674685 (-) True AMCG00019489
AMCG00019501 mRNA upstream 422915 24001200 ~ 24011054 (-) True AMCG00019501
AMCG00019500 mRNA upstream 473726 24052011 ~ 24094664 (-) True AMCG00019500
TU43148 other downstream 376919 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 2811031 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 4127954 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 7855075 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 8584531 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 5939711 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 5966946 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 6060281 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 6100944 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 8643779 32222064 ~ 32233398 (-) True G35476

Expression Profile