RNA id: TU43198


Basic Information

Item Value
RNA id TU43198
length 1238
lncRNA type read_through
GC content 0.34
exon number 2
gene id G34514
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 23610429 ~ 23642241 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttcctttattttaNTTTCTTTTGCTGTGGAACTTAAAGAATGTGAAAGCTGTCAAGGGTGGTCAATTTTACGAATCACTTTCTTGTTTGGTAAGGTAGGACAATGTGATTCATTCCAAAGTAACAGAAGGCTATTTGTATGAAAGTAAAAGGCTTGTGAACAAAGAAAGCTAAGCTGTTGTACATATTTGTAGTTGGCTGTGCATGGTACAAATTTATTAATatgaagaaatgcaaaaatgtattgcttttggTATTTCTATTCTGAGATGAACAAGTAGCATGTAATGCAACTGTTTGACAGGTTAAATCAAATCATGCTTAAAATTGTTTCAATGATGAAATCaagtaacattttcattttactttttattattgtacaggTGTTTTTGTTGAAGTTTAACGCTATTGTCACAGCAGTTTTTATTCTCTGCATTTTTATGTGaactttttaatgttcttatttggatttttagtattttaacatttattttaatcctgaAGACACTTTTTGATTGTGTTTCGTAAGAGACATCTTGGCCTCCTTAGGTGCAATCCTGCCTCTTGTACAAATATGAGCTACTGTCCTGATTCCAAAGGCTTTCAGAACATTGCTTTTGCCTTTTTCCTGAATGTGGATCAGCATTGCAAGACTGAGCTGTCAGTTAACACTATGTGCAAAGGTGTGTTGGCGTGGAACACAATGCTTCCCACAAAAAGGACTggtaaaaacatacaaagattttaaaaaggatgGTCCAATAGCAAATGTACATAAACGTTGCAACTGCACAGCAGCCAAAAACCTTTCTATGGATGGATGGTGTCAAGCTAAAAGAGGACAGCCTTCAAAAGGTTGAAAATAGGATTGTTCTTCTGGATATCAAAGGGATTATCACGGCGCAATCATATTCTACACAATATGTACTCTCAACGCCTGGGTAACATAGGAAATGCACCCTgaggttttaataaaaaaagaagccCCTATGgctaaaactttaaataaactaaaccaaaaatgttattgatgttttatatatagagagtaGTCTCATTAGTTTTTGTTACTGTAATGTTTGAAGTCTCAACTGTACCGTATTACGGTAATAACATGgttttgaaacttttttttattttgtcacagACCTGTTGTCATAGTTGAAATGACGTTTATTGTAGATGGTATTTGAACTTATTCTTCTGGAAATAGTTCATCAAGTATGTTTGTTGCT

Function

GO:

id name namespace
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43184 lncRNA downstream 32144 23576527 ~ 23578285 (-) True G34502
TU43155 lncRNA downstream 323430 23210241 ~ 23286999 (-) True G34476
TU43145 lncRNA downstream 489469 23118801 ~ 23120960 (-) True G34468
TU43099 lncRNA downstream 866247 22707945 ~ 22744182 (-) True AMCG00019487
TU43098 lncRNA downstream 891309 22707945 ~ 22719120 (-) False AMCG00019487
TU43225 lncRNA upstream 256032 23898273 ~ 23947457 (-) True G34541
TU43254 lncRNA upstream 409782 24052023 ~ 24058794 (-) False AMCG00019500
TU43287 lncRNA upstream 503953 24146194 ~ 24146851 (-) True G34596
TU43480 lncRNA upstream 1869843 25512084 ~ 25515224 (-) True G34763
TU43556 lncRNA upstream 2173452 25815693 ~ 25816056 (-) True G34831
AMCG00019482 mRNA downstream 384033 23212063 ~ 23226396 (-) True AMCG00019482
AMCG00019483 mRNA downstream 635301 22955778 ~ 22975128 (-) True AMCG00019483
AMCG00019485 mRNA downstream 721957 22877285 ~ 22888472 (-) True AMCG00019485
AMCG00019484 mRNA downstream 765890 22830147 ~ 22844539 (-) True AMCG00019484
AMCG00019487 mRNA downstream 866637 22670647 ~ 22743792 (-) False AMCG00019487
AMCG00019489 mRNA upstream 28289 23670530 ~ 23674685 (-) True AMCG00019489
AMCG00019501 mRNA upstream 358959 24001200 ~ 24011054 (-) True AMCG00019501
AMCG00019500 mRNA upstream 409770 24052011 ~ 24094664 (-) True AMCG00019500
AMCG00019502 mRNA upstream 576848 24219089 ~ 24466531 (-) True AMCG00019502
AMCG00019510 mRNA upstream 1423305 25065546 ~ 25080710 (-) True AMCG00019510
TU43148 other downstream 410821 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 2844933 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 4161856 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 7888977 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 8618433 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 5875755 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 5902990 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 5996325 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 6036988 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 8579823 32222064 ~ 32233398 (-) True G35476

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1084049 True 3522 lncRNA 0.39 1 NC_048575.1 18234921 ~ 18238442 (+)
striped catfish (Pangasianodon hypophthalmus) TU242534 False 2736 lncRNA 0.39 2 NC_047607.1 3570763 ~ 3573520 (+)
striped catfish (Pangasianodon hypophthalmus) TU396112 True 3757 lncRNA 0.41 2 NC_047616.1 18785492 ~ 18789747 (-)
tiger barb (Puntius tetrazona) TU242534 True 4297 lncRNA 0.40 2 NC_056722.1 18758204 ~ 18762574 (+)