RNA id: TU43225


Basic Information

Item Value
RNA id TU43225
length 344
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G34541
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 23898273 ~ 23947457 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tccaaaactgcagctcgtgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtgtccaaggaaggaaaagcggtgaaccggcgacagggtcatgggcggccaaggctcactgatgcacgtggggagcgaaggctggcccgtgtggtccgatccaacagacgagctactgtagctcaaattgctgaaaaagttaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgacttggcctccaaattccccagatctcaatccaatcgagcatctgtgggatgtgctggacTGTTACGACCCcaagtggctgatgtaaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43198 lncRNA downstream 256032 23610429 ~ 23642241 (-) True G34514
TU43184 lncRNA downstream 319988 23576527 ~ 23578285 (-) True G34502
TU43155 lncRNA downstream 611274 23210241 ~ 23286999 (-) True G34476
TU43145 lncRNA downstream 777313 23118801 ~ 23120960 (-) True G34468
TU43099 lncRNA downstream 1154091 22707945 ~ 22744182 (-) True AMCG00019487
TU43254 lncRNA upstream 104566 24052023 ~ 24058794 (-) False AMCG00019500
TU43287 lncRNA upstream 198737 24146194 ~ 24146851 (-) True G34596
TU43480 lncRNA upstream 1564627 25512084 ~ 25515224 (-) True G34763
TU43556 lncRNA upstream 1868236 25815693 ~ 25816056 (-) True G34831
TU43576 lncRNA upstream 2225605 26173062 ~ 26211553 (-) True G34846
AMCG00019489 mRNA downstream 223588 23670530 ~ 23674685 (-) True AMCG00019489
AMCG00019491 mRNA downstream 275280 23620148 ~ 23622993 (-) True AMCG00019491
AMCG00019490 mRNA downstream 278457 23614127 ~ 23619816 (-) True AMCG00019490
AMCG00019482 mRNA downstream 671877 23212063 ~ 23226396 (-) True AMCG00019482
AMCG00019483 mRNA downstream 923145 22955778 ~ 22975128 (-) True AMCG00019483
AMCG00019501 mRNA upstream 53743 24001200 ~ 24011054 (-) True AMCG00019501
AMCG00019500 mRNA upstream 104554 24052011 ~ 24094664 (-) True AMCG00019500
AMCG00019502 mRNA upstream 271632 24219089 ~ 24466531 (-) True AMCG00019502
AMCG00019510 mRNA upstream 1118089 25065546 ~ 25080710 (-) True AMCG00019510
AMCG00019511 mRNA upstream 1150897 25098354 ~ 25102573 (-) True AMCG00019511
TU43148 other downstream 698665 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 3132777 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 4449700 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 8176821 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 8906277 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 5570539 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 5597774 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 5691109 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 5731772 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 8274607 32222064 ~ 32233398 (-) True G35476

Expression Profile