RNA id: TU43287


Basic Information

Item Value
RNA id TU43287
length 658
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G34596
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 24146194 ~ 24146851 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ataggatccttggatcacttagatactaatggacaccaaacgagcacaatgggtcgaatgtcctcatttgtaaactttgttcttctAATCGGTACTGGATTGTAAATCTGTTTTAGCATCGGCCTTAAGTAGTTAACAACTGTGAGGCTGTTTAAGTGTCTGCTGTGTTAGGATACATCTGGCTGTCAGTCACTtcaattgaataataaaattgaaaaccaACAGATTTTTCAGCTTGACATTTTGCTCAGTGCTGGAATGCTGCAATAGTAAACTAGAATTATCAGGTATAACCTCAGACTGATAGACATATAGGAAATTGTAAAAGTAGAGTAGTACAGAGATGTCATttcatatgaataaaataagtcaTGTGTGAGCAAGTCATAGTACAGGAGTGAGTAACACTGACAAGCACTCGGGTCATTTTCTctcaaattctctttgtttgtgCCAGTATCCCCGCCCTGTGGTTTTGGATAATTCAATGTTCTACTCCTTTTCTATATATATGAGGCACAACTGCTAATTTCCTTTTCAGAGCAAGACTACCAGCTTGTCAgtcattttcttctcctttgtGCTTATTTAACGAATGTTTAGTTCTGTTACAAATTTCTTTGAGCATCTTTGTGTTActgttaatttcaaaataatt

Function

GO:

id name namespace
GO:0004962 endothelin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43254 lncRNA downstream 87400 24052023 ~ 24058794 (-) False AMCG00019500
TU43225 lncRNA downstream 198737 23898273 ~ 23947457 (-) True G34541
TU43198 lncRNA downstream 503953 23610429 ~ 23642241 (-) True G34514
TU43184 lncRNA downstream 567909 23576527 ~ 23578285 (-) True G34502
TU43155 lncRNA downstream 859195 23210241 ~ 23286999 (-) True G34476
TU43480 lncRNA upstream 1365233 25512084 ~ 25515224 (-) True G34763
TU43556 lncRNA upstream 1668842 25815693 ~ 25816056 (-) True G34831
TU43576 lncRNA upstream 2026211 26173062 ~ 26211553 (-) True G34846
TU43584 lncRNA upstream 2145504 26292355 ~ 26292934 (-) False G34853
TU43585 lncRNA upstream 2145504 26292355 ~ 26336737 (-) True G34853
AMCG00019500 mRNA downstream 51530 24052011 ~ 24094664 (-) True AMCG00019500
AMCG00019501 mRNA downstream 135140 24001200 ~ 24011054 (-) True AMCG00019501
AMCG00019489 mRNA downstream 471509 23670530 ~ 23674685 (-) True AMCG00019489
AMCG00019491 mRNA downstream 523201 23620148 ~ 23622993 (-) True AMCG00019491
AMCG00019490 mRNA downstream 526378 23614127 ~ 23619816 (-) True AMCG00019490
AMCG00019502 mRNA upstream 72238 24219089 ~ 24466531 (-) True AMCG00019502
AMCG00019510 mRNA upstream 918695 25065546 ~ 25080710 (-) True AMCG00019510
AMCG00019511 mRNA upstream 951503 25098354 ~ 25102573 (-) True AMCG00019511
AMCG00019512 mRNA upstream 959441 25106292 ~ 25139317 (-) True AMCG00019512
AMCG00019509 mRNA upstream 1006006 25152857 ~ 25158446 (-) True AMCG00019509
TU43148 other downstream 946586 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 3380698 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 4697621 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 8424742 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 9154198 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 5371145 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 5398380 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 5491715 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 5532378 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 8075213 32222064 ~ 32233398 (-) True G35476

Expression Profile