RNA id: TU43411



Basic Information


Item Value
RNA id TU43411
length 209
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G34704
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 25121170 ~ 25121378 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctCTCATCCTGTCAGGTAAACTTGAGAGATCTACCTGCAGTTCACTTTACTAGAAGACAAGCCCTGAAGGGGAACACAGCCATCGGACTTCCAGTCTTTAATGCCATCCCAGTACAGACACCGCGTCCCCTCAATCCTCAAGGTGTAGTTCACAGCATGTGTGATGTACTTATTGCTAGGCGCTCTGTTGTAATTGGCATTGAGGAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU43400 lncRNA upstream 17298 25102389 ~ 25103872 (+) True G34695
TU43323 lncRNA upstream 793151 24327440 ~ 24328019 (+) True G34632
TU43312 lncRNA upstream 881357 24239416 ~ 24239813 (+) True G34621
TU43305 lncRNA upstream 901179 24215877 ~ 24219991 (+) True AMCG00019496
TU43272 lncRNA upstream 975261 24145139 ~ 24145909 (+) True G34581
TU43456 lncRNA downstream 220883 25342261 ~ 25347728 (+) True G34742
TU43562 lncRNA downstream 1130046 26251424 ~ 26326302 (+) False G34834
TU43563 lncRNA downstream 1170977 26292355 ~ 26344732 (+) True G34834
TU43568 lncRNA downstream 1177143 26298521 ~ 26300352 (+) True G34838
TU43598 lncRNA downstream 1394267 26515645 ~ 26515916 (+) True G34863
AMCG00019507 mRNA upstream 57596 25028594 ~ 25063574 (+) True AMCG00019507
AMCG00019506 mRNA upstream 130828 24984428 ~ 24990342 (+) True AMCG00019506
AMCG00019504 mRNA upstream 169046 24949451 ~ 24952124 (+) True AMCG00019504
AMCG00019505 mRNA upstream 240614 24810551 ~ 24880556 (+) True AMCG00019505
AMCG00019503 mRNA upstream 361866 24746477 ~ 24759304 (+) True AMCG00019503
AMCG00019508 mRNA downstream 48290 25169668 ~ 25213712 (+) True AMCG00019508
AMCG00019514 mRNA downstream 130801 25252179 ~ 25299619 (+) True AMCG00019514
AMCG00019513 mRNA downstream 189381 25310759 ~ 25343687 (+) True AMCG00019513
AMCG00019515 mRNA downstream 223444 25344822 ~ 25345076 (+) True AMCG00019515
AMCG00019517 mRNA downstream 252568 25373946 ~ 25407885 (+) True AMCG00019517
TU43194 other upstream 1425369 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 2495965 22615623 ~ 22625205 (+) False AMCG00019475
TU42780 other upstream 4510281 20607474 ~ 20610889 (+) False G34170
TU43819 other downstream 4179577 29300955 ~ 29304646 (+) False AMCG00019551
TU44375 other downstream 7203022 32324400 ~ 32327276 (+) True AMCG00019609
TU44379 other downstream 7209259 32330637 ~ 32392976 (+) False AMCG00019609
TU44804 other downstream 9718938 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 10925112 36046490 ~ 36063845 (+) False AMCG00019662

Expression Profile