RNA id: TU43480


Basic Information

Item Value
RNA id TU43480
length 1368
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G34763
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 25512084 ~ 25515224 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTAATCTTCTCTGTTTAAGCAATTTTGATTCTCTCATTAAGAATCCTTTCACTTTGGACTCCATATAACAGCACTGAAGGATCTCAAAGTCACTGAATCCAGCAAACAGAGAGGAGATAAAGCACAAACATGGATGGacaaaagcaattttattttccactaaggaacaaaatgtttcagaaacGTCATGTACATGCACTGagagttttcctttttattcctcaaaagcatttcaaaatgtgcctttttaCAGGGTGGATGTGAAGTCACATATGAAAAAGGCAATGCTGCACAATGTGTGTTCTCTGTACATCAAGTATCAAACGTTAACATGTTATcaagacaacacaaaaaacaacagcacgTCCCAGAACTGTTATTTGGCAAAGGTATTACACATTCTTGCGCCTCTCCTCTTCCCGATTCATCTTTCAGTTCAAagtgcatacaaaaatacaattcatttaAACCTGCGTGTTCCCCCGTGCTTCATACAGGCCTGGTGCAGTCTCGTTTATTTGAGTAGTTTAGGCACTGTCATACTCGGAACAGTTATATCCCTGAAGATGGGCTGTATGTTCGCAGTTGACGCGGGCCTGTTTTGATTcagagtttcaatgatcatctGCCTCATGTCCCGACTGGCATCCCCTCGCACAGCCAGCAAGGCCGTGATGTGTTCTTCCCTGACATCGGGGTATCTGGAGACGAGTGTCGATACTTCCAGGTACAGTAGGGTGGGGTCTGTGAGTTTGAACACTTCGGCTATGGCAGCAATGGCATCGCACAGACTGTCAGCGGCCTCGCCATCTGAGAGTTTCCTGAATAGGAATTTCAATTGATCCGCTTCCTTGATCATTCTCTCCGCTCCCTCTTTCCGTTCTTCGGCATTTCTGAAGGAGATCCTTTTCTGCATTATAGCCTTTAAGTACTCGATGACCACTCTGCGATGAGCCTCCGTAGTTATCTCctgaaacaaatcaaagaccGTCCCATCGATCTGACAATGACGACAATAAACTGGAGGGAGAATTGTGGCAGAAAACATTAGGTCAATACTTTCGGACCGAGGGCATGATGGGAGTTCAGATTTGAATGGAATggtaacaaacacattttaaacagcttGCCTTATTGTATGGCTTCTTGATCTTAGCAAAATCATAGAAGTAATCCTCCACAGTCGCACAAATGGTGTCCACTGCATTAGATCCCGACAGCCACTTCCTGGTCAACAGCTCATTAAGATGTTGCTGTGAAGAGAAAGATATTTATAATACCATCAAAGTCCACCTCAAGGGAAcagaagaaatatattattttagggGATAAAAATAAGCCCGGTCCATGTTGCGTTTATTAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43287 lncRNA downstream 1365233 24146194 ~ 24146851 (-) True G34596
TU43254 lncRNA downstream 1453290 24052023 ~ 24058794 (-) False AMCG00019500
TU43225 lncRNA downstream 1564627 23898273 ~ 23947457 (-) True G34541
TU43198 lncRNA downstream 1869843 23610429 ~ 23642241 (-) True G34514
TU43184 lncRNA downstream 1933799 23576527 ~ 23578285 (-) True G34502
TU43556 lncRNA upstream 300469 25815693 ~ 25816056 (-) True G34831
TU43576 lncRNA upstream 657838 26173062 ~ 26211553 (-) True G34846
TU43584 lncRNA upstream 777131 26292355 ~ 26292934 (-) False G34853
TU43585 lncRNA upstream 777131 26292355 ~ 26336737 (-) True G34853
TU43586 lncRNA upstream 777131 26292355 ~ 26311314 (-) False G34853
AMCG00019509 mRNA downstream 353638 25152857 ~ 25158446 (-) True AMCG00019509
AMCG00019512 mRNA downstream 372767 25106292 ~ 25139317 (-) True AMCG00019512
AMCG00019511 mRNA downstream 409511 25098354 ~ 25102573 (-) True AMCG00019511
AMCG00019510 mRNA downstream 431374 25065546 ~ 25080710 (-) True AMCG00019510
AMCG00019502 mRNA downstream 1045553 24219089 ~ 24466531 (-) True AMCG00019502
AMCG00019521 mRNA upstream 3803 25519027 ~ 25522993 (-) True AMCG00019521
AMCG00019524 mRNA upstream 89678 25604902 ~ 25613129 (-) True AMCG00019524
AMCG00019525 mRNA upstream 116473 25631697 ~ 25639027 (-) True AMCG00019525
AMCG00019527 mRNA upstream 1837993 27353217 ~ 27379929 (-) True AMCG00019527
AMCG00019536 mRNA upstream 3144793 28660017 ~ 28711602 (-) True AMCG00019536
TU43148 other downstream 2312476 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 4746588 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 6063511 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 9790632 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 10520088 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 4002772 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 4030007 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 4123342 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 4164005 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 6706840 32222064 ~ 32233398 (-) True G35476

Expression Profile