RNA id: TU43556


Basic Information

Item Value
RNA id TU43556
length 364
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G34831
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 25815693 ~ 25816056 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaaaaaaatccagaaaaacgcatttcaaaaaagttataaattgatttgcatgttaatgagggaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgacgtttggcaactcgaaccttcagctccctccacagattttctatgggat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43480 lncRNA downstream 300469 25512084 ~ 25515224 (-) True G34763
TU43287 lncRNA downstream 1668842 24146194 ~ 24146851 (-) True G34596
TU43254 lncRNA downstream 1756899 24052023 ~ 24058794 (-) False AMCG00019500
TU43225 lncRNA downstream 1868236 23898273 ~ 23947457 (-) True G34541
TU43198 lncRNA downstream 2173452 23610429 ~ 23642241 (-) True G34514
TU43576 lncRNA upstream 357006 26173062 ~ 26211553 (-) True G34846
TU43584 lncRNA upstream 476299 26292355 ~ 26292934 (-) False G34853
TU43585 lncRNA upstream 476299 26292355 ~ 26336737 (-) True G34853
TU43586 lncRNA upstream 476299 26292355 ~ 26311314 (-) False G34853
TU43594 lncRNA upstream 561061 26377117 ~ 26377354 (-) True G34859
AMCG00019525 mRNA downstream 176666 25631697 ~ 25639027 (-) True AMCG00019525
AMCG00019524 mRNA downstream 202564 25604902 ~ 25613129 (-) True AMCG00019524
AMCG00019521 mRNA downstream 292700 25519027 ~ 25522993 (-) True AMCG00019521
AMCG00019509 mRNA downstream 657247 25152857 ~ 25158446 (-) True AMCG00019509
AMCG00019512 mRNA downstream 676376 25106292 ~ 25139317 (-) True AMCG00019512
AMCG00019527 mRNA upstream 1537161 27353217 ~ 27379929 (-) True AMCG00019527
AMCG00019536 mRNA upstream 2843961 28660017 ~ 28711602 (-) True AMCG00019536
AMCG00019541 mRNA upstream 2902024 28718080 ~ 28826591 (-) True AMCG00019541
AMCG00019540 mRNA upstream 3339281 29155337 ~ 29155822 (-) True AMCG00019540
AMCG00019539 mRNA upstream 3432508 29248564 ~ 29260695 (-) True AMCG00019539
TU43148 other downstream 2616085 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 5050197 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 6367120 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 10094241 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 10823697 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 3701940 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 3729175 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 3822510 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 3863173 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 6406008 32222064 ~ 32233398 (-) True G35476

Expression Profile