RNA id: TU43568


Basic Information

Item Value
RNA id TU43568
length 431
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G34838
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 26298521 ~ 26300352 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcagttcagaggagagcaaccagacttattccaggtctgaagggaaagtcctactcggagagactgagggaactgaaccttttcaccctggaacagaggagactatgggGGACcagatccaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatagaaattgggcttcaaggcattcaaaatggaaaacaggagacacttctttacacagagagttgtcacaatctggaataaactacccagcgatgtggtagaagctgaaagtttgggaacatttaaaaatagtctggataggatccttggatcacttagatattaatggacaccaaatgagcacaatgggttgaatggcctcctctcgtttgtaaactttctt

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
ko03010 Ribosome
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43456 lncRNA upstream 950793 25342261 ~ 25347728 (+) True G34742
TU43411 lncRNA upstream 1177143 25121170 ~ 25121378 (+) True G34704
TU43400 lncRNA upstream 1194649 25102389 ~ 25103872 (+) True G34695
TU43323 lncRNA upstream 1970502 24327440 ~ 24328019 (+) True G34632
TU43312 lncRNA upstream 2058708 24239416 ~ 24239813 (+) True G34621
TU43598 lncRNA downstream 215293 26515645 ~ 26515916 (+) True G34863
TU43634 lncRNA downstream 818172 27118524 ~ 27156206 (+) True G34893
TU43658 lncRNA downstream 1179969 27480321 ~ 27480677 (+) True G34912
TU43662 lncRNA downstream 1427065 27727417 ~ 27727643 (+) True G34916
TU43667 lncRNA downstream 1459936 27760288 ~ 27760653 (+) True G34921
AMCG00019526 mRNA upstream 104995 26170249 ~ 26193526 (+) True AMCG00019526
AMCG00019523 mRNA upstream 697076 25587990 ~ 25601445 (+) True AMCG00019523
AMCG00019522 mRNA upstream 738230 25559830 ~ 25560291 (+) True AMCG00019522
AMCG00019518 mRNA upstream 739431 25539733 ~ 25559090 (+) True AMCG00019518
AMCG00019520 mRNA upstream 761605 25526231 ~ 25536916 (+) True AMCG00019520
AMCG00019528 mRNA downstream 548973 26849325 ~ 26857024 (+) True AMCG00019528
AMCG00019531 mRNA downstream 597315 26897667 ~ 26900729 (+) True AMCG00019531
AMCG00019530 mRNA downstream 652345 26952697 ~ 26957589 (+) True AMCG00019530
AMCG00019529 mRNA downstream 979368 27279720 ~ 27282910 (+) True AMCG00019529
AMCG00019533 mRNA downstream 1734332 28034684 ~ 28034998 (+) True AMCG00019533
TU43194 other upstream 2602720 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 3673316 22615623 ~ 22625205 (+) False AMCG00019475
TU42780 other upstream 5687632 20607474 ~ 20610889 (+) False G34170
TU43819 other downstream 3000603 29300955 ~ 29304646 (+) False AMCG00019551
TU44375 other downstream 6024048 32324400 ~ 32327276 (+) True AMCG00019609
TU44379 other downstream 6030285 32330637 ~ 32392976 (+) False AMCG00019609
TU44804 other downstream 8539964 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 9746138 36046490 ~ 36063845 (+) False AMCG00019662

Expression Profile