RNA id: TU43584


Basic Information

Item Value
RNA id TU43584
length 549
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G34853
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 26292355 ~ 26336737 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AggagatatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttgagcgtggcatggttgttggtgccagacgggccggtctgagtatttcacaatctgctcagttactgggattttcacgcgtgaaaagggaaaaacatccagtatgcggcagtcctgtgggggcgaaaatgccttgttgatgctagaggtcagaggagaatgggccgactgattcaagctgatagaagagcaactttgactgaaataaccactcgttacaaccgaggtatgcagcaaagcatttgtgaagccacaacacgtacaaccttgaggcggatgggctacaacagcagaagaccccaccGAATGAGACAGAATGAGAACATGGATCCATCATGCCTTGTTACCACTGTGCAGGCTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43576 lncRNA downstream 80802 26173062 ~ 26211553 (-) True G34846
TU43556 lncRNA downstream 476299 25815693 ~ 25816056 (-) True G34831
TU43480 lncRNA downstream 777131 25512084 ~ 25515224 (-) True G34763
TU43287 lncRNA downstream 2145504 24146194 ~ 24146851 (-) True G34596
TU43254 lncRNA downstream 2233561 24052023 ~ 24058794 (-) False AMCG00019500
TU43594 lncRNA upstream 84183 26377117 ~ 26377354 (-) True G34859
TU43607 lncRNA upstream 377971 26670905 ~ 26676220 (-) True G34868
TU43608 lncRNA upstream 377971 26670905 ~ 26676220 (-) False G34868
TU43649 lncRNA upstream 1057273 27350207 ~ 27401087 (-) True G34905
TU43676 lncRNA upstream 1674220 27967154 ~ 27967390 (-) True G34929
AMCG00019525 mRNA downstream 653328 25631697 ~ 25639027 (-) True AMCG00019525
AMCG00019524 mRNA downstream 679226 25604902 ~ 25613129 (-) True AMCG00019524
AMCG00019521 mRNA downstream 769362 25519027 ~ 25522993 (-) True AMCG00019521
AMCG00019509 mRNA downstream 1133909 25152857 ~ 25158446 (-) True AMCG00019509
AMCG00019512 mRNA downstream 1153038 25106292 ~ 25139317 (-) True AMCG00019512
AMCG00019527 mRNA upstream 1060283 27353217 ~ 27379929 (-) True AMCG00019527
AMCG00019536 mRNA upstream 2367083 28660017 ~ 28711602 (-) True AMCG00019536
AMCG00019541 mRNA upstream 2425146 28718080 ~ 28826591 (-) True AMCG00019541
AMCG00019540 mRNA upstream 2862403 29155337 ~ 29155822 (-) True AMCG00019540
AMCG00019539 mRNA upstream 2955630 29248564 ~ 29260695 (-) True AMCG00019539
TU43148 other downstream 3092747 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 5526859 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 6843782 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 10570903 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 11300359 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 3225062 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 3252297 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 3345632 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 3386295 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 5929130 32222064 ~ 32233398 (-) True G35476

Expression Profile