RNA id: TU43634



Basic Information


Item Value
RNA id TU43634
length 335
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G34893
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 27118524 ~ 27156206 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaaaaaaatccagaaaaacgcatttcaaaaaagttataaattgatttgcatgttaatgagtgaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgacatttggcaactcgaaccttcagctccctccacag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU43598 lncRNA upstream 602608 26515645 ~ 26515916 (+) True G34863
TU43563 lncRNA upstream 773792 26292355 ~ 26344732 (+) True G34834
TU43562 lncRNA upstream 792222 26251424 ~ 26326302 (+) False G34834
TU43568 lncRNA upstream 818172 26298521 ~ 26300352 (+) True G34838
TU43456 lncRNA upstream 1770796 25342261 ~ 25347728 (+) True G34742
TU43658 lncRNA downstream 324115 27480321 ~ 27480677 (+) True G34912
TU43662 lncRNA downstream 571211 27727417 ~ 27727643 (+) True G34916
TU43667 lncRNA downstream 604082 27760288 ~ 27760653 (+) True G34921
TU43673 lncRNA downstream 800561 27956767 ~ 27956966 (+) True G34926
TU43678 lncRNA downstream 1018466 28174672 ~ 28193989 (+) True G34930
AMCG00019530 mRNA upstream 160935 26952697 ~ 26957589 (+) True AMCG00019530
AMCG00019531 mRNA upstream 217795 26897667 ~ 26900729 (+) True AMCG00019531
AMCG00019528 mRNA upstream 261500 26849325 ~ 26857024 (+) True AMCG00019528
AMCG00019526 mRNA upstream 924998 26170249 ~ 26193526 (+) True AMCG00019526
AMCG00019523 mRNA upstream 1517079 25587990 ~ 25601445 (+) True AMCG00019523
AMCG00019529 mRNA downstream 123514 27279720 ~ 27282910 (+) True AMCG00019529
AMCG00019533 mRNA downstream 878478 28034684 ~ 28034998 (+) True AMCG00019533
AMCG00019532 mRNA downstream 878804 28035010 ~ 28035417 (+) True AMCG00019532
AMCG00019535 mRNA downstream 1457049 28613255 ~ 28710887 (+) True AMCG00019535
AMCG00019534 mRNA downstream 1556598 28712804 ~ 28730320 (+) True AMCG00019534
TU43194 other upstream 3422723 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 4493319 22615623 ~ 22625205 (+) False AMCG00019475
TU42780 other upstream 6507635 20607474 ~ 20610889 (+) False G34170
TU43819 other downstream 2144749 29300955 ~ 29304646 (+) False AMCG00019551
TU44375 other downstream 5168194 32324400 ~ 32327276 (+) True AMCG00019609
TU44379 other downstream 5174431 32330637 ~ 32392976 (+) False AMCG00019609
TU44804 other downstream 7684110 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 8890284 36046490 ~ 36063845 (+) False AMCG00019662

Expression Profile