RNA id: TU43679


Basic Information

Item Value
RNA id TU43679
length 1210
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G34931
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 28192767 ~ 28193999 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaagactaaatgtagcactacactaattatacaaaagggaaaaactaattaaaattcaactctagatcaacaaatcaaagacaaatcacttccgtgaccaaatcaaagaccatgggatcgcatatgataacacacaaatcgttaaacaaaaaaggttataaacacattgactacaataccggttagtaagacgaaggtgagtctctcattagtattgttagtcagacattaaataactacgcaggttagtatttatgtcaggtaacttctcgttatatatatatcagtctcatttatgtttaggtgccgagaaagatccttgttaccacaatttccttcaactgattattattcaatgattaaggataggcagggccaccaataatctaatgtctattaacttgtgtcaatttcagactaaacagttaaacaggaatgagaagatatttctcggcgttgacagattttatttctaaaattatcaacaaaacagtttaatgcagcactcatttatatttaagaaaactaaatgatattacacattctagagttatgaatcacagattaacatttctaattgatttctcaaatgtcatgaatcacaaactccaaactgttaaacttatctgaacttcgtcgcagagaggcctctctgtcttcaggctcagataacagcacacggcacgaggtccgtgtggtttggaacaaaggcagtccggttcggctttgtccaataacttccactcagtcgatgcacgtagagtcttttccaaacagattttccactggtttgaaggctccaaggttgtgcacaaaatcttcttggcaagcagggtttccaccatagttacctgaagacaaagtctttgaggaaagcagggccttgtttggttccaagggttgagtttcttaagactcaaatagctatttaaatgactgacactttcgtattcagtcgacttagtcaattgtccagctgtaaaactccactgatcaggtgggcacaggcgggcagcgcagtctgtaaagttctttatttaataaagtcctttaaaataattcttcgtacggctcaatctccttctcccaggttaactcttctgttgccggcaaagacttggttggtttctggttccggttcgggcaacagagctacaggttgagctgtggcagcgagtttctggttcaggtgagagagagagagagaatg

Function

GO:

id name namespace
GO:0030030 cell projection organization biological_process
GO:0030031 cell projection assembly biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43676 lncRNA downstream 225377 27967154 ~ 27967390 (-) True G34929
TU43649 lncRNA downstream 791680 27350207 ~ 27401087 (-) True G34905
TU43607 lncRNA downstream 1516547 26670905 ~ 26676220 (-) True G34868
TU43608 lncRNA downstream 1516547 26670905 ~ 26676220 (-) False G34868
TU43594 lncRNA downstream 1815413 26377117 ~ 26377354 (-) True G34859
TU43683 lncRNA upstream 18140 28212139 ~ 28212389 (-) True G34933
TU43722 lncRNA upstream 446233 28640232 ~ 28647267 (-) True G34968
TU43760 lncRNA upstream 631321 28825320 ~ 28825668 (-) True G35002
TU43778 lncRNA upstream 755968 28949967 ~ 28950230 (-) True G35014
TU43856 lncRNA upstream 1438195 29632194 ~ 29633736 (-) True G35083
AMCG00019527 mRNA downstream 812838 27353217 ~ 27379929 (-) True AMCG00019527
AMCG00019525 mRNA downstream 2553740 25631697 ~ 25639027 (-) True AMCG00019525
AMCG00019524 mRNA downstream 2579638 25604902 ~ 25613129 (-) True AMCG00019524
AMCG00019521 mRNA downstream 2669774 25519027 ~ 25522993 (-) True AMCG00019521
AMCG00019509 mRNA downstream 3034321 25152857 ~ 25158446 (-) True AMCG00019509
AMCG00019536 mRNA upstream 466018 28660017 ~ 28711602 (-) True AMCG00019536
AMCG00019541 mRNA upstream 524081 28718080 ~ 28826591 (-) True AMCG00019541
AMCG00019540 mRNA upstream 961338 29155337 ~ 29155822 (-) True AMCG00019540
AMCG00019539 mRNA upstream 1054565 29248564 ~ 29260695 (-) True AMCG00019539
AMCG00019543 mRNA upstream 1084798 29278797 ~ 29300537 (-) True AMCG00019543
TU43148 other downstream 4993159 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 7427271 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 8744194 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 12471315 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 13200771 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 1323997 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 1351232 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 1444567 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 1485230 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 4028065 32222064 ~ 32233398 (-) True G35476

Expression Profile