RNA id: TU43709



Basic Information


Item Value
RNA id TU43709
length 377
lncRNA type intronic
GC content 0.40
exon number 1
gene id G34955
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 28656590 ~ 28656966 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


agtttttcccttttcacaccattctttgtaaaccctagaaatggttgtacgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccataaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtaaatggAGGTTGTAAAACTGTTAATGAAGAGTACATTTCTACTTTTCCTTGGAGTGCTGGGTAATAGtgaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU43708 lncRNA upstream 2575 28651669 ~ 28654015 (+) False AMCG00019535
TU43691 lncRNA upstream 126959 28529171 ~ 28529631 (+) True G34941
TU43688 lncRNA upstream 326756 28329317 ~ 28329834 (+) True G34938
TU43687 lncRNA upstream 356933 28299422 ~ 28299657 (+) True G34937
TU43684 lncRNA upstream 437281 28212585 ~ 28219309 (+) True G34934
TU43752 lncRNA downstream 148620 28805586 ~ 28805811 (+) True G34994
TU43777 lncRNA downstream 293003 28949969 ~ 28950211 (+) True G35013
TU43797 lncRNA downstream 495734 29152700 ~ 29156187 (+) True G35031
TU43858 lncRNA downstream 978742 29635708 ~ 29683436 (+) True G35085
TU43966 lncRNA downstream 1515444 30172410 ~ 30180360 (+) True G35166
AMCG00019532 mRNA upstream 621173 28035010 ~ 28035417 (+) True AMCG00019532
AMCG00019533 mRNA upstream 621592 28034684 ~ 28034998 (+) True AMCG00019533
AMCG00019529 mRNA upstream 1373680 27279720 ~ 27282910 (+) True AMCG00019529
AMCG00019530 mRNA upstream 1699001 26952697 ~ 26957589 (+) True AMCG00019530
AMCG00019531 mRNA upstream 1755861 26897667 ~ 26900729 (+) True AMCG00019531
AMCG00019534 mRNA downstream 55838 28712804 ~ 28730320 (+) True AMCG00019534
AMCG00019537 mRNA downstream 169387 28826353 ~ 28889651 (+) True AMCG00019537
AMCG00019538 mRNA downstream 425747 29082713 ~ 29100803 (+) True AMCG00019538
AMCG00019542 mRNA downstream 610945 29267911 ~ 29272251 (+) True AMCG00019542
AMCG00019551 mRNA downstream 643989 29300955 ~ 29305006 (+) True AMCG00019551
TU43194 other upstream 4960789 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 6031385 22615623 ~ 22625205 (+) False AMCG00019475
TU42780 other upstream 8045701 20607474 ~ 20610889 (+) False G34170
TU43819 other downstream 643989 29300955 ~ 29304646 (+) False AMCG00019551
TU44375 other downstream 3667434 32324400 ~ 32327276 (+) True AMCG00019609
TU44379 other downstream 3673671 32330637 ~ 32392976 (+) False AMCG00019609
TU44804 other downstream 6183350 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 7389524 36046490 ~ 36063845 (+) False AMCG00019662

Expression Profile