RNA id: TU43722


Basic Information

Item Value
RNA id TU43722
length 1576
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G34968
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 28640232 ~ 28647267 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTAAATGACAGTTCTAAAGGGATATCATTTAACATACAGCTAAACTAATCATTGCATCACCAAatatttttgcttattttactttaatgtaaAGTGCATGAAATAATTTCCCTGGAACTTCTATCCCCCCCCCATTTCTTTCAGGACGCTACAAACAGTGGGTCCCTCACATGCTCGAACATACACAGTTGCAGTTTACTTCAAGGGAGAGAGAATCGGATGTGGGAAAGGACCAAGtattcaGCAAGCTGAAATGGGAGCTGCAATGGATGCACTGGAAAAATATAACTTTCCCCAGATGGCTCATCAGAAGCGCTTCATTGAGCGGAAATACAGGCAAGAGCTAAAAGAAAtgagacgagagagagagaggcaggaaaAGGAGTCTGATGAGACTGAGGAGAGCAGAAAGTAAAAAGTGCCCTGGAAGTGTGCAAGTTCCCGGGATTCATGAACTACAGCCAGCACCGGGACAATTCAAAGCATGTGTGTCCAGACAAAAGGGAAGCTGTGGAACACATTCAGAGGAGTAGGTGGAGGCTCGATCCAGCAAATGCTGCAACGTTTGTTATCATTCtgttttttactattttattgtagtttgttttaatcagtgagtttttgtcttgttattttccagtgttgtgtttttagtGTCGGTACttaattagtattttaaattatgttcttTCTAAATACTCACTTGCATAATAAATCTTAGTCTTGAAGTCTtttactctttttttctttctatcccTTGAACTTATTTTCTGTACTGAAGATAAACATGTGCTCCTTCCTGAGAGTAAATATTAGCCATTTTGTGCCaccttttcaatttatttttattattaataatttataaagtcTTAGATGTGCATAGTGGCCTGTATAgcaaaagaaaactgaacacaaatacAGAACTGTTACTATACTCTTAGTGCAAAggttaactgaaaaataaagcacacacaatggaaataaaacacCAAAGACATGTCAACCTTAACCATAGGAAGTGTCACTGAAATTGTTTTTGCTATGATGTTGTAATAGTATTGCTATTAATTCTAAAAACGGTAATAACAGAAAACCTACTTGATATTTATTACAAGAATGTCACTTGAATTTAAAGTGTGTTAAAGGGATATGAACACATAAGGTACACATAAGTTGAAATAATGCTTGTTAGTCACCTTTGTGATTTATACAtagcagattttaaaaatactttgttgtaatgtacttttaataaagaaataatgcatGCTATTCTTACCTGGTAAGATATTGAAAAGGAAACCATTCTACCATCTTGCTAGAAACAATTGTTTCTGGTTGACATTAGCAAATGTTTGGGACCTCCATAGTTAAATTTgtcaattaaaagtaattaagatTACAGGTATACATTAGAAGCTCTTTGAAATTGGCCAAATTGAAATAAGGCAACTGTAGAAGTGCTATACTTTTGAAGGAAATATTGTAAGACTGTTACTCTCTACCATCATGCTAGCGTGAAAATGACTGATTGTGATATGATGGGTATTCATGAATAAATTAACAAGTTTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43683 lncRNA downstream 427843 28212139 ~ 28212389 (-) True G34933
TU43679 lncRNA downstream 446233 28192767 ~ 28193999 (-) True G34931
TU43676 lncRNA downstream 672842 27967154 ~ 27967390 (-) True G34929
TU43649 lncRNA downstream 1239145 27350207 ~ 27401087 (-) True G34905
TU43607 lncRNA downstream 1964012 26670905 ~ 26676220 (-) True G34868
TU43760 lncRNA upstream 178053 28825320 ~ 28825668 (-) True G35002
TU43778 lncRNA upstream 302700 28949967 ~ 28950230 (-) True G35014
TU43856 lncRNA upstream 984927 29632194 ~ 29633736 (-) True G35083
TU43896 lncRNA upstream 1071078 29718345 ~ 29720885 (-) False G35111
TU43897 lncRNA upstream 1076412 29723679 ~ 29731767 (-) True G35111
AMCG00019527 mRNA downstream 1260303 27353217 ~ 27379929 (-) True AMCG00019527
AMCG00019525 mRNA downstream 3001205 25631697 ~ 25639027 (-) True AMCG00019525
AMCG00019524 mRNA downstream 3027103 25604902 ~ 25613129 (-) True AMCG00019524
AMCG00019521 mRNA downstream 3117239 25519027 ~ 25522993 (-) True AMCG00019521
AMCG00019509 mRNA downstream 3481786 25152857 ~ 25158446 (-) True AMCG00019509
AMCG00019536 mRNA upstream 12750 28660017 ~ 28711602 (-) True AMCG00019536
AMCG00019541 mRNA upstream 70813 28718080 ~ 28826591 (-) True AMCG00019541
AMCG00019540 mRNA upstream 508070 29155337 ~ 29155822 (-) True AMCG00019540
AMCG00019539 mRNA upstream 601297 29248564 ~ 29260695 (-) True AMCG00019539
AMCG00019543 mRNA upstream 631530 29278797 ~ 29300537 (-) True AMCG00019543
TU43148 other downstream 5440624 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 7874736 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 9191659 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 12918780 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 13648236 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 870729 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 897964 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 991299 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 1031962 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 3574797 32222064 ~ 32233398 (-) True G35476

Expression Profile