RNA id: TU43760


Basic Information

Item Value
RNA id TU43760
length 349
lncRNA type intronic
GC content 0.34
exon number 1
gene id G35002
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 28825320 ~ 28825668 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attatcattgtAAACAATCAAATAGGAACAAAGAGTGAGATCATGAACCTCATTCTCCATAGCATGTTCTACAACTGgttgagatagagagagagagaaagagagagagagagatgttctTTGCTCCTGGTAAATGCCAAAAATAGGTATAAAAAAAGCCTTGTTATCTTTTTATCAAAGTCAAAATTACATTACTTCTACTTTAACTATAAGATTGGATCAATCTGCtgggtaaataaataactaatgttttgtaacatttgGCAAATATTTGTTCTTTCACTGCCTGGAAATGTGTAAGCATTTGTGTTGACTGTCATAAAACACAGTACTGGATGACTGGCCCCAT

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43722 lncRNA downstream 178053 28640232 ~ 28647267 (-) True G34968
TU43683 lncRNA downstream 612931 28212139 ~ 28212389 (-) True G34933
TU43679 lncRNA downstream 631321 28192767 ~ 28193999 (-) True G34931
TU43676 lncRNA downstream 857930 27967154 ~ 27967390 (-) True G34929
TU43649 lncRNA downstream 1424233 27350207 ~ 27401087 (-) True G34905
TU43778 lncRNA upstream 124299 28949967 ~ 28950230 (-) True G35014
TU43856 lncRNA upstream 806526 29632194 ~ 29633736 (-) True G35083
TU43896 lncRNA upstream 892677 29718345 ~ 29720885 (-) False G35111
TU43897 lncRNA upstream 898011 29723679 ~ 29731767 (-) True G35111
TU43922 lncRNA upstream 945918 29771586 ~ 29772192 (-) True G35129
AMCG00019536 mRNA downstream 113718 28660017 ~ 28711602 (-) True AMCG00019536
AMCG00019527 mRNA downstream 1445391 27353217 ~ 27379929 (-) True AMCG00019527
AMCG00019525 mRNA downstream 3186293 25631697 ~ 25639027 (-) True AMCG00019525
AMCG00019524 mRNA downstream 3212191 25604902 ~ 25613129 (-) True AMCG00019524
AMCG00019521 mRNA downstream 3302327 25519027 ~ 25522993 (-) True AMCG00019521
AMCG00019540 mRNA upstream 329669 29155337 ~ 29155822 (-) True AMCG00019540
AMCG00019539 mRNA upstream 422896 29248564 ~ 29260695 (-) True AMCG00019539
AMCG00019543 mRNA upstream 453129 29278797 ~ 29300537 (-) True AMCG00019543
AMCG00019545 mRNA upstream 577673 29403341 ~ 29403998 (-) True AMCG00019545
AMCG00019544 mRNA upstream 578395 29404063 ~ 29405022 (-) True AMCG00019544
TU43148 other downstream 5625712 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 8059824 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 9376747 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 13103868 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 13833324 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 692328 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 719563 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 812898 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 853561 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 3396396 32222064 ~ 32233398 (-) True G35476

Expression Profile