RNA id: TU43778


Basic Information

Item Value
RNA id TU43778
length 264
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G35014
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 28949967 ~ 28950230 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctctggtttgaagtggtcgatgcctttcatgattttgaagacttgaatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcagttcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagcccagaactgcacacagtatccagatgagctctaactagtgcattgtacagtctgaacatcactgc

Function

GO:

id name namespace
GO:0042326 negative regulation of phosphorylation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43760 lncRNA downstream 124299 28825320 ~ 28825668 (-) True G35002
TU43722 lncRNA downstream 302700 28640232 ~ 28647267 (-) True G34968
TU43683 lncRNA downstream 737578 28212139 ~ 28212389 (-) True G34933
TU43679 lncRNA downstream 755968 28192767 ~ 28193999 (-) True G34931
TU43676 lncRNA downstream 982577 27967154 ~ 27967390 (-) True G34929
TU43856 lncRNA upstream 681964 29632194 ~ 29633736 (-) True G35083
TU43896 lncRNA upstream 768115 29718345 ~ 29720885 (-) False G35111
TU43897 lncRNA upstream 773449 29723679 ~ 29731767 (-) True G35111
TU43922 lncRNA upstream 821356 29771586 ~ 29772192 (-) True G35129
TU43937 lncRNA upstream 876427 29826657 ~ 29828650 (-) True G35144
AMCG00019541 mRNA downstream 123376 28718080 ~ 28826591 (-) True AMCG00019541
AMCG00019536 mRNA downstream 238365 28660017 ~ 28711602 (-) True AMCG00019536
AMCG00019527 mRNA downstream 1570038 27353217 ~ 27379929 (-) True AMCG00019527
AMCG00019525 mRNA downstream 3310940 25631697 ~ 25639027 (-) True AMCG00019525
AMCG00019524 mRNA downstream 3336838 25604902 ~ 25613129 (-) True AMCG00019524
AMCG00019540 mRNA upstream 205107 29155337 ~ 29155822 (-) True AMCG00019540
AMCG00019539 mRNA upstream 298334 29248564 ~ 29260695 (-) True AMCG00019539
AMCG00019543 mRNA upstream 328567 29278797 ~ 29300537 (-) True AMCG00019543
AMCG00019545 mRNA upstream 453111 29403341 ~ 29403998 (-) True AMCG00019545
AMCG00019544 mRNA upstream 453833 29404063 ~ 29405022 (-) True AMCG00019544
TU43148 other downstream 5750359 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 8184471 20743530 ~ 20765496 (-) True AMCG00019446
TU42573 other downstream 9501394 19442395 ~ 19448573 (-) True AMCG00019419
TU41832 other downstream 13228515 15692482 ~ 15721452 (-) True G33381
TU41680 other downstream 13957971 14951842 ~ 14991996 (-) True G33259
TU43838 other upstream 567766 29517996 ~ 29521984 (-) True G35067
TU43847 other upstream 595001 29545231 ~ 29550162 (-) False AMCG00019556
TU43875 other upstream 688336 29638566 ~ 29645963 (-) False AMCG00019554
TU43881 other upstream 728999 29679229 ~ 29685302 (-) True G35101
TU44357 other upstream 3271834 32222064 ~ 32233398 (-) True G35476

Expression Profile