RNA id: TU43881


Basic Information

Item Value
RNA id TU43881
length 857
RNA type TUCP
GC content 0.38
exon number 3
gene id G35101
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 29679229 ~ 29685302 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGTTTGGTTGTGGAGAAGAAGTCTAGGATAAACAGATTGAGAATCATGTGACAGTTTGTGATCAGAATGAGAAAGGAAGGAAGTAAAACCTTACCTGTGCTATGAAGACTCAGAAGTATATCCAAAAATGACACTTCTGTCATTATGACAATCTGTCTTGAAGCAAACCCTGAGCAAagCTTTTAAAGAGAAGATGGAAAGCCTTAGCACAACACCAGATTATCATACACATGCACCAGACTACTATGATGATGACTACATTGATGATTTGTGCCACAATGAAGGTATCATCAGTGTTGGGGCTGTTGTGACAACGGTTTTTTTCACTGTAGTGATTGTTTTGAGTCTTCTAGGAAATCTTCTGGTCCTGGGGATCCTGATCAAATATGAAAATCTCAGATCTGTCACAAATACATTCATTCTAAACCTCGCTCTGTCAGATTTGATATTCACTTTTGGATTGCCTTTTTGGGCCCATTACCATACAGCAGGTTGGACGTTTGATACATCTCTGTGCAAAGTCATCAGCTTTATTTTCCAAGTTGGCTTTTACAGTGGTATTATATTCCTAACAATGATGACCATCCATCGTTATATAGCAGTAGTTCATCCATTATATGATCTTGGCTCCAGAAAGTGGTGCTATGGCATGAGTGCTTCTGTGATCATTTGGATTGTGAGTTTCTTAGCAGCACTCCCTGGATATATGTACCATGAAGTCCAATTACATGATAAAAATATGCACTGTGAGTATAATGACATGAAATGGAAACACATTGGAGTGTATCAGCAAAATGCCTTCTTCTTAGTTGCCTTATGTGTGATTGtattctgttattttcaaatactCAAGAC

Function

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43856 lncRNA downstream 45493 29632194 ~ 29633736 (-) True G35083
TU43778 lncRNA downstream 728999 28949967 ~ 28950230 (-) True G35014
TU43760 lncRNA downstream 853561 28825320 ~ 28825668 (-) True G35002
TU43722 lncRNA downstream 1031962 28640232 ~ 28647267 (-) True G34968
TU43683 lncRNA downstream 1466840 28212139 ~ 28212389 (-) True G34933
TU43896 lncRNA upstream 33043 29718345 ~ 29720885 (-) False G35111
TU43897 lncRNA upstream 38377 29723679 ~ 29731767 (-) True G35111
TU43922 lncRNA upstream 86284 29771586 ~ 29772192 (-) True G35129
TU43937 lncRNA upstream 141355 29826657 ~ 29828650 (-) True G35144
TU43938 lncRNA upstream 162342 29847644 ~ 29847858 (-) True G35145
AMCG00019554 mRNA downstream 33271 29638991 ~ 29645958 (-) True AMCG00019554
AMCG00019556 mRNA downstream 132455 29535744 ~ 29546774 (-) True AMCG00019556
AMCG00019546 mRNA downstream 237452 29440921 ~ 29441777 (-) True AMCG00019546
AMCG00019544 mRNA downstream 274207 29404063 ~ 29405022 (-) True AMCG00019544
AMCG00019545 mRNA downstream 275231 29403341 ~ 29403998 (-) True AMCG00019545
AMCG00019557 mRNA upstream 76027 29761329 ~ 29766606 (-) True AMCG00019557
AMCG00019555 mRNA upstream 88383 29773685 ~ 29785242 (-) True AMCG00019555
AMCG00019564 mRNA upstream 451429 30136731 ~ 30138161 (-) True AMCG00019564
AMCG00019563 mRNA upstream 482213 30167515 ~ 30172280 (-) True AMCG00019563
AMCG00019566 mRNA upstream 498213 30183515 ~ 30184507 (-) True AMCG00019566
TU43875 other downstream 33266 29638566 ~ 29645963 (-) False AMCG00019554
TU43847 other downstream 129067 29545231 ~ 29550162 (-) False AMCG00019556
TU43838 other downstream 157245 29517996 ~ 29521984 (-) True G35067
TU43148 other downstream 6479621 23147861 ~ 23199608 (-) True G34470
TU42823 other downstream 8913733 20743530 ~ 20765496 (-) True AMCG00019446
TU44357 other upstream 2536762 32222064 ~ 32233398 (-) True G35476
TU44748 other upstream 4825431 34510733 ~ 34522270 (-) True AMCG00019645
TU44832 other upstream 5369717 35055019 ~ 35055444 (-) True G35867
TU45993 other upstream 12858814 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 12959022 42644324 ~ 42656393 (-) True G36862

Expression Profile