RNA id: TU43922


Basic Information

Item Value
RNA id TU43922
length 607
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G35129
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 29771586 ~ 29772192 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtctgtgtttttagttatttttagaaaactTATATGGAGTTTTAATTTAACACTCATTAAATTATTGCAAACTGAATTCTGTAATAAACAAATTGGTGATAAATTGTTCAGTACCATATGTTTTagatgtgtatatgtatatatatttacacacacacctacacctGTGTTTTGTTACTGCTATTTCCACAGTTACATATGGAACCCTATAGGTGACACTACAGAAATCTATGttcatcttaataaaaacatttcaacaccTCTAGGTTGAAagtgaagaaaattaaaataattcagagatTCCAAAAGTATTGTGAAGTGCAATTTGATTTTAACCACCTTCATTGAAAATGACATGCATGTACAGCTTAtgctacaatgtaaaatatgatgATACAATTGAAGTtacaagaacatttaaaaatgtacttctgTTTGAAGCAACACTctgatttcaaaaatatttgaaagtttAAAACTTTAATCATGAAACCAACAAGTTGAAGGCCATATATTCccgctgtctcgaccagactACACAGAGTtacctcgtctccccatacatcccctccagaccactgtggtgccaaaagactaactctgcctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43897 lncRNA downstream 39819 29723679 ~ 29731767 (-) True G35111
TU43896 lncRNA downstream 50701 29718345 ~ 29720885 (-) False G35111
TU43856 lncRNA downstream 137850 29632194 ~ 29633736 (-) True G35083
TU43778 lncRNA downstream 821356 28949967 ~ 28950230 (-) True G35014
TU43760 lncRNA downstream 945918 28825320 ~ 28825668 (-) True G35002
TU43937 lncRNA upstream 54465 29826657 ~ 29828650 (-) True G35144
TU43938 lncRNA upstream 75452 29847644 ~ 29847858 (-) True G35145
TU43951 lncRNA upstream 309458 30081650 ~ 30126330 (-) True G35157
TU43993 lncRNA upstream 640006 30412198 ~ 30442590 (-) True G35190
TU44022 lncRNA upstream 734878 30507070 ~ 30520464 (-) True G35214
AMCG00019557 mRNA downstream 4980 29761329 ~ 29766606 (-) True AMCG00019557
AMCG00019554 mRNA downstream 125628 29638991 ~ 29645958 (-) True AMCG00019554
AMCG00019556 mRNA downstream 224812 29535744 ~ 29546774 (-) True AMCG00019556
AMCG00019546 mRNA downstream 329809 29440921 ~ 29441777 (-) True AMCG00019546
AMCG00019544 mRNA downstream 366564 29404063 ~ 29405022 (-) True AMCG00019544
AMCG00019555 mRNA upstream 1493 29773685 ~ 29785242 (-) True AMCG00019555
AMCG00019564 mRNA upstream 364539 30136731 ~ 30138161 (-) True AMCG00019564
AMCG00019563 mRNA upstream 395323 30167515 ~ 30172280 (-) True AMCG00019563
AMCG00019566 mRNA upstream 411323 30183515 ~ 30184507 (-) True AMCG00019566
AMCG00019571 mRNA upstream 676001 30448193 ~ 30462200 (-) True AMCG00019571
TU43881 other downstream 86284 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 125623 29638566 ~ 29645963 (-) False AMCG00019554
TU43847 other downstream 221424 29545231 ~ 29550162 (-) False AMCG00019556
TU43838 other downstream 249602 29517996 ~ 29521984 (-) True G35067
TU43148 other downstream 6571978 23147861 ~ 23199608 (-) True G34470
TU44357 other upstream 2449872 32222064 ~ 32233398 (-) True G35476
TU44748 other upstream 4738541 34510733 ~ 34522270 (-) True AMCG00019645
TU44832 other upstream 5282827 35055019 ~ 35055444 (-) True G35867
TU45993 other upstream 12771924 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 12872132 42644324 ~ 42656393 (-) True G36862

Expression Profile