RNA id: TU43937


Basic Information

Item Value
RNA id TU43937
length 1974
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G35144
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 29826657 ~ 29828650 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcaTTTCTCTGTactaatattgtttaatattgtgtttttttaaatacaaagtttCTTACAATGTTCTTACAATGAACAAAACCAGTTGTAAACACACGATGAACAATTATTTTGAGACAAAATCTGAAACCGAACACTTGAAAATCACAAAGCTTTTCAATTCAACAGGAACATTCTGCATGAAAGGAGAAAGAAGATAGGGGAAATAAACTCCTGCTACATAGATATAACCTTTACTTTGaattattgttgtaattataCTACAAACGTATGGAGAAGAGAGGGGGACACTGACTGAAGAatacccattttaaaatgtttatttgcatttatctatattgttaaaaaatatatttcaaggaTTTAACCTTTACAGAAAACCAGAGGGATATTTCTcctgacaaataaaaaatacttgtttAAATAACACATGGAGTGAAAAGccttgtgctttaaaaacattcaaccaTGACAAACGTTTTACCAAGAGATGCATTTACATCAAATTTCATCTTACATCTATAAATGTAAATAGGTAGTTTGCTGTTGAACAATGAACCTTCATGGAAGGTGAGATTGGCACTCTATAGTTCAAGAATGAAATTATGTAGATACAGTTCACATAGACTTTAACTCAGTGggttaaaataatgaatagtcTTTGACCGGGTAGAGCAACACTTGCTGCCGTGCAATAGCGTGTATAcatttgcaataataatttaatttcattaatcaAAAAGACACCCTTGACCAAATTAATTTATACTTAGAATATTGGGGGGGGTTTATATAAGACATTGGATCAAAAAAATTAATTAGAGGGAATCATAtttgcacaaaaaataatttgtaagaGTTATCTGttaaagaataatttaattttgcttatTCAATTCGACTAatatatatatactgtgacaCTTTGAGAGGGCTTAGGACAGGCGCGTTCTCAGAAAGCTGTGTCCCTGAGCAGAGCGAGTAATTAGCTGAAGGTGTGCGCAGGGGAGAGCTGCTCTGCTTACATAGCTCCCATTTTGTACCACACCccaaaatgtgtcacaatatctttacaaaaatgtacacaatttgCAATATCATAAAATAGGGGCAATCTACAGTTTTATCTGTATGCTAATTATACACATGATGGTATGCAAATTTGAGAAAAGTCTTATTCATCATatagaataatacaaaacaataatgctactctctttaaattaaataaacaaaaccagacCAAAAATCTGTTTCCTTGTAACACATATTCAACCAAccgattttttctttttaatacaccAATACAGGATTTGAATGCCTGTTTGTTACAGTAGCAGTGATATCTGtactagaaatatatatatatatatatatatatatatatatatatatatatatagtcaacggaaaagcttatttgaacatttacatacattatagGGAGGAGATGTAGAACATAGcttatatgttgttattttagtGTTATTTTCACTCAGTGTTTTCTTAGTGAAGTGACAAAGTATGAATGAATTATATCATGGTAACTGAATTAATATTTAGCTTTCTGTAATATCTGAACATCATACAGTACTATGCCCAACCTTTAATCCCTCTGTGATCCCTCTGTTTCTATCTCAGCAGCTTTGTGTCTATGCGATCTACTCACAGCAAAACATTCAGAGCCCATCATAGAAAGAGCATCGTTACTTCTGTCCAGAATCTCAGTGTGCGCTTTATCATCACTGTGCCTGACTCTGCATCATATACAACTACACAAGTTCAAATAGACTGTGATATTGGAGTTTTAAAGGATTAGTAACATTTGAGTGGACAGGATAGTTTCTCAACTACTTCCTGtctttttggtttatttttgtaataaaatgtatatgggTAAAAGACACTTCAATCCCAAATATTAGGCAGCTTGTCTATAATTTGTATGTTTCATTATTTCCTTCACACAGCAA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0061061 muscle structure development biological_process

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43922 lncRNA downstream 54465 29771586 ~ 29772192 (-) True G35129
TU43897 lncRNA downstream 94890 29723679 ~ 29731767 (-) True G35111
TU43896 lncRNA downstream 105772 29718345 ~ 29720885 (-) False G35111
TU43856 lncRNA downstream 192921 29632194 ~ 29633736 (-) True G35083
TU43778 lncRNA downstream 876427 28949967 ~ 28950230 (-) True G35014
TU43938 lncRNA upstream 18994 29847644 ~ 29847858 (-) True G35145
TU43951 lncRNA upstream 253000 30081650 ~ 30126330 (-) True G35157
TU43993 lncRNA upstream 583548 30412198 ~ 30442590 (-) True G35190
TU44022 lncRNA upstream 678420 30507070 ~ 30520464 (-) True G35214
TU44073 lncRNA upstream 764291 30592941 ~ 30674883 (-) True G35243
AMCG00019555 mRNA downstream 41415 29773685 ~ 29785242 (-) True AMCG00019555
AMCG00019557 mRNA downstream 60051 29761329 ~ 29766606 (-) True AMCG00019557
AMCG00019554 mRNA downstream 180699 29638991 ~ 29645958 (-) True AMCG00019554
AMCG00019556 mRNA downstream 279883 29535744 ~ 29546774 (-) True AMCG00019556
AMCG00019546 mRNA downstream 384880 29440921 ~ 29441777 (-) True AMCG00019546
AMCG00019564 mRNA upstream 308081 30136731 ~ 30138161 (-) True AMCG00019564
AMCG00019563 mRNA upstream 338865 30167515 ~ 30172280 (-) True AMCG00019563
AMCG00019566 mRNA upstream 354865 30183515 ~ 30184507 (-) True AMCG00019566
AMCG00019571 mRNA upstream 619543 30448193 ~ 30462200 (-) True AMCG00019571
AMCG00019572 mRNA upstream 644796 30473446 ~ 30477047 (-) True AMCG00019572
TU43881 other downstream 141355 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 180694 29638566 ~ 29645963 (-) False AMCG00019554
TU43847 other downstream 276495 29545231 ~ 29550162 (-) False AMCG00019556
TU43838 other downstream 304673 29517996 ~ 29521984 (-) True G35067
TU43148 other downstream 6627049 23147861 ~ 23199608 (-) True G34470
TU44357 other upstream 2393414 32222064 ~ 32233398 (-) True G35476
TU44748 other upstream 4682083 34510733 ~ 34522270 (-) True AMCG00019645
TU44832 other upstream 5226369 35055019 ~ 35055444 (-) True G35867
TU45993 other upstream 12715466 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 12815674 42644324 ~ 42656393 (-) True G36862

Expression Profile