RNA id: TU43938


Basic Information

Item Value
RNA id TU43938
length 215
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G35145
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 29847644 ~ 29847858 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCACCTGTTGCAGGAAACAGAAGTGAAATTTGAAAACAGGACTGAGAGTACAACTAGGACAATGTGCCTTGCATCTAATTTGAATTGATAGAAAAATCATTAGAATactgttaaataatatttaacttgTAAAGGCAAGGACTGTTCTCATGATACTTGATTCTAAACTATGTGTACTAATAGACTTCCCATGTTTCTACTCTTTGACTTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43937 lncRNA downstream 18994 29826657 ~ 29828650 (-) True G35144
TU43922 lncRNA downstream 75452 29771586 ~ 29772192 (-) True G35129
TU43897 lncRNA downstream 115877 29723679 ~ 29731767 (-) True G35111
TU43896 lncRNA downstream 126759 29718345 ~ 29720885 (-) False G35111
TU43856 lncRNA downstream 213908 29632194 ~ 29633736 (-) True G35083
TU43951 lncRNA upstream 233792 30081650 ~ 30126330 (-) True G35157
TU43993 lncRNA upstream 564340 30412198 ~ 30442590 (-) True G35190
TU44022 lncRNA upstream 659212 30507070 ~ 30520464 (-) True G35214
TU44073 lncRNA upstream 745083 30592941 ~ 30674883 (-) True G35243
TU44140 lncRNA upstream 1189266 31037124 ~ 31037337 (-) True G35304
AMCG00019555 mRNA downstream 62402 29773685 ~ 29785242 (-) True AMCG00019555
AMCG00019557 mRNA downstream 81038 29761329 ~ 29766606 (-) True AMCG00019557
AMCG00019554 mRNA downstream 201686 29638991 ~ 29645958 (-) True AMCG00019554
AMCG00019556 mRNA downstream 300870 29535744 ~ 29546774 (-) True AMCG00019556
AMCG00019546 mRNA downstream 405867 29440921 ~ 29441777 (-) True AMCG00019546
AMCG00019564 mRNA upstream 288873 30136731 ~ 30138161 (-) True AMCG00019564
AMCG00019563 mRNA upstream 319657 30167515 ~ 30172280 (-) True AMCG00019563
AMCG00019566 mRNA upstream 335657 30183515 ~ 30184507 (-) True AMCG00019566
AMCG00019571 mRNA upstream 600335 30448193 ~ 30462200 (-) True AMCG00019571
AMCG00019572 mRNA upstream 625588 30473446 ~ 30477047 (-) True AMCG00019572
TU43881 other downstream 162342 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 201681 29638566 ~ 29645963 (-) False AMCG00019554
TU43847 other downstream 297482 29545231 ~ 29550162 (-) False AMCG00019556
TU43838 other downstream 325660 29517996 ~ 29521984 (-) True G35067
TU43148 other downstream 6648036 23147861 ~ 23199608 (-) True G34470
TU44357 other upstream 2374206 32222064 ~ 32233398 (-) True G35476
TU44748 other upstream 4662875 34510733 ~ 34522270 (-) True AMCG00019645
TU44832 other upstream 5207161 35055019 ~ 35055444 (-) True G35867
TU45993 other upstream 12696258 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 12796466 42644324 ~ 42656393 (-) True G36862

Expression Profile