RNA id: TU44357


Basic Information

Item Value
RNA id TU44357
length 712
RNA type TUCP
GC content 0.44
exon number 2
gene id G35476
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 32222064 ~ 32233398 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taacagtgagagacagaataacaacaaaaaaatccagaaaaacacatttcaaaaaagttataaattgatttacatgttaatgagggaaataagtatttgatcccctatcaatcagcaagatttctggctcccaggtgtcttttatacaggtaatgagctgagattaggagcactctcttaaagggagtgctctaatctcagctcgttacctgtataaaagacacggagtgctcctaatctcagctcgttacctgtataaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatctCAGGGACAAGactgtagacctacacaaggctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaataactgtcagtctccctcagtctggggctccatgcaatatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactacgccatgaaggactgaaatccaaggtccaaggtccccctgctcaagaaagcacatgtacaggcccgtctgaagtttgcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44347 lncRNA downstream 38494 32182024 ~ 32183570 (-) True G35471
TU44334 lncRNA downstream 149778 32072057 ~ 32072286 (-) True G35458
TU44323 lncRNA downstream 475198 31746625 ~ 31746866 (-) True G35448
TU44258 lncRNA downstream 794525 31422029 ~ 31427539 (-) True AMCG00019597
TU44261 lncRNA downstream 811407 31407982 ~ 31410657 (-) True G35397
TU44362 lncRNA upstream 52018 32285416 ~ 32285686 (-) True G35481
TU44365 lncRNA upstream 63455 32296853 ~ 32297284 (-) True G35484
TU44404 lncRNA upstream 96223 32329621 ~ 32330419 (-) True G35516
TU44418 lncRNA upstream 249824 32483222 ~ 32496523 (-) True G35526
TU44431 lncRNA upstream 605435 32838833 ~ 32874693 (-) True G35537
AMCG00019599 mRNA downstream 692638 31521564 ~ 31529426 (-) True AMCG00019599
AMCG00019596 mRNA downstream 754423 31456128 ~ 31467641 (-) True AMCG00019596
AMCG00019598 mRNA downstream 789501 31429321 ~ 31432563 (-) True AMCG00019598
AMCG00019597 mRNA downstream 794481 31423497 ~ 31427583 (-) False AMCG00019597
AMCG00019592 mRNA downstream 881065 31316662 ~ 31340999 (-) True AMCG00019592
AMCG00019608 mRNA upstream 12434 32245832 ~ 32246580 (-) True AMCG00019608
AMCG00019606 mRNA upstream 64079 32297477 ~ 32307436 (-) True AMCG00019606
AMCG00019607 mRNA upstream 84085 32317483 ~ 32325501 (-) True AMCG00019607
AMCG00019611 mRNA upstream 99058 32332456 ~ 32352846 (-) True AMCG00019611
AMCG00019610 mRNA upstream 127211 32360609 ~ 32391262 (-) True AMCG00019610
TU43881 other downstream 2536762 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 2576101 29638566 ~ 29645963 (-) False AMCG00019554
TU43847 other downstream 2671902 29545231 ~ 29550162 (-) False AMCG00019556
TU43838 other downstream 2700080 29517996 ~ 29521984 (-) True G35067
TU43148 other downstream 9022456 23147861 ~ 23199608 (-) True G34470
TU44748 other upstream 2277335 34510733 ~ 34522270 (-) True AMCG00019645
TU44832 other upstream 2821621 35055019 ~ 35055444 (-) True G35867
TU45993 other upstream 10310718 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 10410926 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 11064833 43298231 ~ 43360906 (-) True G36982

Expression Profile