RNA id: TU44373



Basic Information


Item Value
RNA id TU44373
length 817
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G35490
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 32319548 ~ 32320956 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CACGAATTCCCATCATATAGCTTTTGTAACACTATCTTTAGGAATACCAagtgaaaacatgaaatgtacCCATTTGCAGGTCAACCGTGCGTGTCTGAGCAAGGTGGTGCTCTGGTAAAGGGACCCTGTGCTCCGGCAAAGGCTGGACAGATGGGAATTTCTGTAGCACTGCTGGTGTGGACAGAGGAGTTGGCATTGTCGAAAGGTCATCAGGTGGTGGGACGGAGAAAACCACTGGCTTTGAGGAGACTGACTCTCGGTTGATTAGCATCACCTGGATGGGTGCCGTCTGGCTCCTCAAatttactttgtatttcttttgacCATTTTgactcttaaaaaaTAGTTCAGGCACAGGTACTTCCAATTGTGTCCCCGAAGGAGCAATAACAGCCAACAGAGTGTCACCTGTGGGGGGGGAAAGGCAATTCAATACAAGGTTTGTTGTATACAGATGTGCCTAACACTCTGTAGCTGTCTACTTAGATTAATTTACTCATTTAAAATAGTAAGCCTATTTACACCTGTATGAGGATTTGTGTATGAACTTTGATATGCCTGGCAAAAATGAAACACTAGGATATTAAACTAGTTTCAAAAATGATTCTCACCACTGAAGGCATTACAGATGTCTTCATGAGTGACATAAGCAAATCTGCTGTTCACTGGGTCATCTGAAACATTCTTTATGCTCTGCTGAAGCCAGGTCTTCCGAGTGTCCAGCTCTTTCTCCTTCATTTCCAGGTCTTCAATCTGTGCCTTTAAATACTGAACCTGGTCCAGAACCTCTTTGGTGTTGCACCCAGTGTTCACACCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU44372 lncRNA upstream 1977 32310037 ~ 32317571 (+) True AMCG00019605
TU44367 lncRNA upstream 13201 32297404 ~ 32306347 (+) True G35485
TU44366 lncRNA upstream 18206 32297404 ~ 32301342 (+) False G35485
TU44361 lncRNA upstream 33860 32285444 ~ 32285688 (+) True G35480
TU44322 lncRNA upstream 572672 31746627 ~ 31746876 (+) True G35447
TU44419 lncRNA downstream 189725 32510681 ~ 32510949 (+) True G35527
TU44447 lncRNA downstream 654436 32975392 ~ 32975656 (+) True G35553
TU44478 lncRNA downstream 788044 33109000 ~ 33113379 (+) True G35578
TU44499 lncRNA downstream 1063790 33384746 ~ 33385185 (+) True G35595
TU44549 lncRNA downstream 1267427 33588383 ~ 33588587 (+) True G35636
AMCG00019605 mRNA upstream 2564 32310114 ~ 32316984 (+) False AMCG00019605
AMCG00019604 mRNA upstream 128562 32182079 ~ 32190986 (+) True AMCG00019604
AMCG00019603 mRNA upstream 232785 32074208 ~ 32086763 (+) True AMCG00019603
AMCG00019602 mRNA upstream 557602 31758085 ~ 31761946 (+) True AMCG00019602
AMCG00019601 mRNA upstream 602991 31679378 ~ 31716557 (+) True AMCG00019601
AMCG00019609 mRNA downstream 3670 32324626 ~ 32331064 (+) False AMCG00019609
AMCG00019613 mRNA downstream 588046 32909002 ~ 32929192 (+) True AMCG00019613
AMCG00019615 mRNA downstream 713815 33034771 ~ 33043805 (+) True AMCG00019615
AMCG00019616 mRNA downstream 745166 33066122 ~ 33095201 (+) True AMCG00019616
AMCG00019614 mRNA downstream 797176 33118132 ~ 33141895 (+) True AMCG00019614
TU43819 other upstream 3014902 29300955 ~ 29304646 (+) False AMCG00019551
TU43194 other upstream 8623747 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 9694343 22615623 ~ 22625205 (+) False AMCG00019475
TU42783 other upstream 11708659 20607474 ~ 20610889 (+) True G34170
TU44375 other downstream 3444 32324400 ~ 32327276 (+) True AMCG00019609
TU44379 other downstream 9681 32330637 ~ 32392976 (+) False AMCG00019609
TU44804 other downstream 2519360 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 3725534 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other downstream 3725534 36046490 ~ 36063845 (+) False AMCG00019662

Expression Profile