RNA id: TU44419


Basic Information

Item Value
RNA id TU44419
length 269
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G35527
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 32510681 ~ 32510949 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatacaccgatcagctataacattatgaccacctgcctaatattgtgtaggtcccccttttgccgccaaaacagccctgacccgtcgaggcatggactccaccaaacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggtggggcttccatggatcggacttgtttgtccagcacagatgctcgattggattgagatctggggaatttggaggccaagtcaacacctt

Function

GO:

id name namespace
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44373 lncRNA upstream 189725 32319548 ~ 32320956 (+) True G35490
TU44372 lncRNA upstream 193110 32310037 ~ 32317571 (+) True AMCG00019605
TU44367 lncRNA upstream 204334 32297404 ~ 32306347 (+) True G35485
TU44366 lncRNA upstream 209339 32297404 ~ 32301342 (+) False G35485
TU44361 lncRNA upstream 224993 32285444 ~ 32285688 (+) True G35480
TU44447 lncRNA downstream 464443 32975392 ~ 32975656 (+) True G35553
TU44478 lncRNA downstream 598051 33109000 ~ 33113379 (+) True G35578
TU44499 lncRNA downstream 873797 33384746 ~ 33385185 (+) True G35595
TU44549 lncRNA downstream 1077434 33588383 ~ 33588587 (+) True G35636
TU44574 lncRNA downstream 1168174 33679123 ~ 33724773 (+) True G35658
AMCG00019609 mRNA upstream 179617 32324626 ~ 32331064 (+) False AMCG00019609
AMCG00019605 mRNA upstream 193697 32310114 ~ 32316984 (+) False AMCG00019605
AMCG00019604 mRNA upstream 319695 32182079 ~ 32190986 (+) True AMCG00019604
AMCG00019603 mRNA upstream 423918 32074208 ~ 32086763 (+) True AMCG00019603
AMCG00019602 mRNA upstream 748735 31758085 ~ 31761946 (+) True AMCG00019602
AMCG00019613 mRNA downstream 398053 32909002 ~ 32929192 (+) True AMCG00019613
AMCG00019615 mRNA downstream 523822 33034771 ~ 33043805 (+) True AMCG00019615
AMCG00019616 mRNA downstream 555173 33066122 ~ 33095201 (+) True AMCG00019616
AMCG00019614 mRNA downstream 607183 33118132 ~ 33141895 (+) True AMCG00019614
AMCG00019619 mRNA downstream 1162602 33673551 ~ 33694225 (+) True AMCG00019619
TU44379 other upstream 117705 32330637 ~ 32392976 (+) False AMCG00019609
TU44375 other upstream 183405 32324400 ~ 32327276 (+) True AMCG00019609
TU43819 other upstream 3206035 29300955 ~ 29304646 (+) False AMCG00019551
TU43194 other upstream 8814880 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 9885476 22615623 ~ 22625205 (+) False AMCG00019475
TU44804 other downstream 2329367 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 3535541 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other downstream 3535541 36046490 ~ 36063845 (+) False AMCG00019662
TU45071 other downstream 3781397 36292346 ~ 36299547 (+) True AMCG00019671
TU45249 other downstream 5003038 37513987 ~ 37516027 (+) True G36212

Expression Profile