RNA id: TU44549


Basic Information

Item Value
RNA id TU44549
length 205
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G35636
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 33588383 ~ 33588587 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgctggacaaacaagtccgatccatggaggccccaccttgcaacttacaggacttaaaggatctgctgctaacgtcttggtgccagataccacagcacaccttcagaggtctagtggagtccatgcctcgacgggtcagggctgttttggcagcaaaatggggacctacacaatattaggcaggtggtcataatgttatggctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44499 lncRNA upstream 203198 33384746 ~ 33385185 (+) True G35595
TU44478 lncRNA upstream 475004 33109000 ~ 33113379 (+) True G35578
TU44447 lncRNA upstream 612727 32975392 ~ 32975656 (+) True G35553
TU44419 lncRNA upstream 1077434 32510681 ~ 32510949 (+) True G35527
TU44373 lncRNA upstream 1267427 32319548 ~ 32320956 (+) True G35490
TU44574 lncRNA downstream 90536 33679123 ~ 33724773 (+) True G35658
TU44608 lncRNA downstream 176134 33764721 ~ 33764947 (+) True G35689
TU44610 lncRNA downstream 198931 33787518 ~ 33787785 (+) True G35691
TU44633 lncRNA downstream 336258 33924845 ~ 33925369 (+) True G35709
TU44740 lncRNA downstream 917471 34506058 ~ 34578440 (+) False AMCG00019638
AMCG00019614 mRNA upstream 446488 33118132 ~ 33141895 (+) True AMCG00019614
AMCG00019616 mRNA upstream 493182 33066122 ~ 33095201 (+) True AMCG00019616
AMCG00019615 mRNA upstream 544578 33034771 ~ 33043805 (+) True AMCG00019615
AMCG00019613 mRNA upstream 659191 32909002 ~ 32929192 (+) True AMCG00019613
AMCG00019609 mRNA upstream 1257319 32324626 ~ 32331064 (+) False AMCG00019609
AMCG00019619 mRNA downstream 84964 33673551 ~ 33694225 (+) True AMCG00019619
AMCG00019621 mRNA downstream 105715 33694302 ~ 33705462 (+) True AMCG00019621
AMCG00019620 mRNA downstream 155949 33744536 ~ 33746650 (+) True AMCG00019620
AMCG00019626 mRNA downstream 210960 33799547 ~ 33845086 (+) True AMCG00019626
AMCG00019627 mRNA downstream 466016 34054603 ~ 34063226 (+) True AMCG00019627
TU44379 other upstream 1195407 32330637 ~ 32392976 (+) False AMCG00019609
TU44375 other upstream 1261107 32324400 ~ 32327276 (+) True AMCG00019609
TU43819 other upstream 4283737 29300955 ~ 29304646 (+) False AMCG00019551
TU43194 other upstream 9892582 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 10963178 22615623 ~ 22625205 (+) False AMCG00019475
TU44804 other downstream 1251729 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 2457903 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other downstream 2457903 36046490 ~ 36063845 (+) False AMCG00019662
TU45071 other downstream 2703759 36292346 ~ 36299547 (+) True AMCG00019671
TU45249 other downstream 3925400 37513987 ~ 37516027 (+) True G36212

Expression Profile